Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00789 ATGGCTTGTGGGAGAAAATGCAGTCCAATTCCTTCCCCTCTCCCATCGCCGAAGTTGCTTCCGATGCCCACTTGGCCAATTATGTCCGCCGGCGATGGCCACGGCTTTGATCAAATCTATGTTCTTCGAGTCGTGATGGCCTCCATAGCTTCCATAATTGGTCTGCTTCTCCTTCTCTTTGTCGTGCTAAAATTTATAGGAAGATACTACTTCTCGAGGAGATATTTCAATAGGAGAATCAACTCACCGATTCTGTTTGATATTCGCGGCGATTCTGTGTTCTCCGATGACGACGATGGACCACCAATTATGCATCCGATCTGGTTCATCAACACTGTCGGTCTCCAGCAATCCGTTATCGATTCAATTGCAATCTTCAAATACAGAAAAGACAATGGGTTAATTGAAGGAACGGAATGTTCTGTGTGTTTAGGTGAATTTCAAGAAGACGATAGCCTCCGAATCTTACCTAAATGCACCCACGCTTTTCACGTTCAATGCATCGATACTTGGCTGAGATCGCGGAAGAATTGCCCCTTGTGTCGAGCTCCGATTGTTCGTGAAAATTCCGGGAGAGAGGTTACTGCCGTGACGGTGCCTGAACTTGAGGTCGTCGGCGAGATCCGTATGGAGAACTCGGGTGGTAGTGGTAGGGTTGATAGTTCTCAGGTTGGAGAAGGAGAGAATAGTCAATTGAGGGTTGAAGATGATGATGATTCTGGGATTGTGGCTATTGAAGATGGAGCAGATGGTGAAGTTTCAGATAAGAATTTGGGAAATTGTGACAAGATGAATAGAGTGAGGAGATCAGTTTCAGTTCATTCTTTTCCTCCTTCTACATTTGAAGCTCCAACTCAGGAGCTGAATTCGTATTCTCTACACTCCTTTTAA 891 0.4523 MACGRKCSPIPSPLPSPKLLPMPTWPIMSAGDGHGFDQIYVLRVVMASIASIIGLLLLLFVVLKFIGRYYFSRRYFNRRINSPILFDIRGDSVFSDDDDGPPIMHPIWFINTVGLQQSVIDSIAIFKYRKDNGLIEGTECSVCLGEFQEDDSLRILPKCTHAFHVQCIDTWLRSRKNCPLCRAPIVRENSGREVTAVTVPELEVVGEIRMENSGGSGRVDSSQVGEGENSQLRVEDDDDSGIVAIEDGADGEVSDKNLGNCDKMNRVRRSVSVHSFPPSTFEAPTQELNSYSLHSF 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00789 296 SMART FANCL_C_2 136 189 - -
Accr8g00789 296 MobiDBLite consensus disorder prediction 211 235 - -
Accr8g00789 296 CDD RING-H2_EL5-like 139 182 - -
Accr8g00789 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 191 IPR013083 -
Accr8g00789 296 SMART ring_2 140 181 IPR001841 -
Accr8g00789 296 FunFam RING-H2 finger protein ATL43 115 189 - -
Accr8g00789 296 Pfam Ring finger domain 139 182 IPR001841 -
Accr8g00789 296 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Accr8g00789 296 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 44 190 IPR044675 -
Accr8g00789 296 SUPERFAMILY RING/U-box 132 188 - -
Accr8g00789 296 MobiDBLite consensus disorder prediction 215 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00789 Accr-Chr8 13962187 13963077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00789 48 255 C3H Transcription Factor Family AT1G72220 40.909 5.75e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00789 - - pcin:129308680 402.134