Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00788 ATGAGGAAAGCCTATCGACCCATTAATCATACGGGTTTCCCAAGAAACCCGGAATTTCTTCGAAATTCTCACCCTCCCTCCAATTTTCGTTCCCCCTGGAAACCAGAATTTCGCCCCAACCAACGTCTGGACCGTCCACCGGAGAACTTTCCTCACGCACGTCGACCTAATTTCGTCGTTTTGCTCCGCTCTGGCCGCCGTGATTTCACCAGGGCGGATGTCGTGGACTTGATTGCAAAATGTAAGTCCCAGCCCGAAAGTTCCAGTGTTTTCCCTGGTGATCACGTTGCCGCTCGCCTTAATTTTTTTCAGTGGTGCGACGCGCTCGAGGCCTTCGTTTTCTTTTGGGAGTTTTGTCTCAATGAAGTTCATGGCTTTACTCCAGAGCTCAAATCGCATGTTCTCGTGCCTTCCGACATGGACGAGCTGCGTGACCGACTTCGGACCATTTTTGCTTGTCATGTGAAGGGCTTAATGGAAGGCAAGGAAGTCAAGAGATGGCGTGAGGAAAGTGAGCGTGCCTCGAAGGAAATTGCGCACTTAACGTATTCACTCAAGAGGCCGAAGTCATTCGGCGCGTTGGACGATCTCCGAGAAAAGAGAAAAGGGCTAGATTCAGAGAAAAAGTTGATTGAAAGGAGAATAAAGGAGTTCCAGTCCGCCATGGAGTGTATATTGCGGCATCTCGAGGACAGCAAGGTGGATGAGGATGGTATCTCTGTTTTCCGAAAATTGAAGTTTGATGAAACTTCGGATTGGAGGCGTATACATAGGATGGTAATGCGGGAGCGTCGCAGACTTGAGGAGGGATTACCCATTTATGCTTACCGGAGGGATATTCTTCAGGAAATACATTCTCAACAGATAATGGTCTTAGTTGGAGAGACTGGTTCTGGTAAGAGTACACAGTTGGTACAGTTTCTTGCTGATTCAGGCATTGGTGCTAGTGAATCTATTATATGCACTCAGCCTCGGAAGATTGCTGCCAGGTCATTGGCATTGAGGGTACAGGAAGAAAGTAGTGGATGCTATGAAGACAATCCAATTAAGTTTTATCCAACATTTTCATCCTCAAATAAGTTCAATTCTGGAATAATATTCATGACAGACAATTGTCTATTGCAGCAGTACATGAGTGATGATAATTTGTCTGGGATCTCTTGCCTCATAATTGATGAGGCTCATGAAAGGAGCCTAAATACAGATCTACTGTTGGCATTGATTAAGAGTTTGCTCTGTAGGAGGGTTGAAATGCGGCTTATCATTATGTCTGCTACGGCTGATGCGAAGCAGCTATCGGATTACTTTTATGGCTGTGGAATATTTCATGTGGTAGGGAGAAACTTTCCAGTTGATGTGAGATACGTTCCTTCTGCATATGCTGGACACTCTGGTCCTACCATTGTTGCTTCATATGCCTCTGATGTAGTGAGAATGGCAACTGAAGTTCACAGAACAGAGAAAGAGGGAACAATTCTTGCCTTTTTGACCTCACAGATGGAAGTAGAATGGGCTTGTGAAAAGTTTGATGCTCTCTCTGCTGTTGCTTTGCCCTTACATGGCAAGCTTTCACCTGAAGAGCAGTTATGTGTTTTCCAGGACGTCCCTTTAAAAAGAAAGGTGATCTTTGCAACTAATCTTGCTGAGACATCGCTTACTATTCCTGGTGTCAAGTATGTCATTGATCCTGGGTTTGTTAAAGATAGTAGATATGAACCAGGCAGTGGAATGAATGTGCTTAAAGTTTGCTGGATTAGCCAAAGTTCTGCCAATCAACGGGCTGGTCGTGCTGGGAGGACTGAGCCTGGTAGGTGCTATAGACTCTACTCAGAATTTGATTATAATTCTATGGCACCAAATCAAGAACCTGAGATTCGACGAGTTCATCTTGGTGTAGCAGTGTTGAGGATACTTGCCTTGGGGGTGAAGAATGTGCTGGATTTTGATTATGTTGATGCTCCGAGTCCTAGTGCTATCGATATGGCTTTGAGGAATCTAAGTCAGTTAGGAGCAATTAGATTGAACAACAATAATTATGAATTAACTGAAGAAGGTAGGTACTTGGTAAAAATGGGTGTTGAGCCTAGGCTTGGCAAACTTATTCTTTCTTGTTGCCAGTATAGTATGGTCAAAGAAGGTCTTACTCTTGCAGCAGTGATGGCCAATGCCAGTAGCATCTTTTGTAGAGTAGGAAATGAAGATGATAAACAGAGATCTGATTGTCGTAAGGTGCAGTTTTGCCATTGTGATGGTGACCTTTTTACTCTTCTATCTGTATACAAGGAATGGGAAGCTTTGCCCCGAGAGAGGAAAAACAAATGGTGTTGGGAAAACAGTATTAATGCCAAGTCCATGAGGAGATGCCAAGACGCCATTAAGGATTTGGAATCTTGCCTTGAGTATGAACTTGATGTTGTTACTCCGAGCTACTGGCGTTGGGATCCTCACAACTCTTCTGATTGTGATAAGTATCTTAAAAAGGCTATACTGTCCTCACTTTCTGAGAATGTAGCCATGTACTCTGGATGCCTTCAACATGGTTATGAAGTAGCATTAACTGGGCAGCTTGTTCAACTGCATCCATCTTGTTCGTTGCTAGTGTTCTCTGAGAAACCTAGCTGGGTTGTTTTTGGTGAGATACTCTCTGCTTCGAGCCAATATTTGGTCTGTGTGAGTTCTTTTGACTTTGAATCAATATGCACCCTTGACCCTCCTCCATTGTTTGATGTATTTCTGATGGAAAGAAAGAAATTGCAAATGAAGATGTGGACTGATCTTGGTTGTATTCTGCTCAAGAGGTTTTGTGGGAAAGGAAACTGTAATTTGTTTGGTCTTGCATCACGCATAAGAACAGCTTGCAGGGATGATCGTATCTTCATTGAAGTCAATGTTGACCAGAATGAAATTCAGCTTTATGCCTCCTCAGGTGACATGGAATTGGCCATTGCAATGGTTAATGAAGCTCTGGAATATGAGGAAAAGTGGCTGCGTACTGAATGCTTGGAGAAATGTTTGTATCACGGGTCTGGGGTATCATCACCAGTAGCTTTGTTTGGATCTGGTGCTGAGATAAAGCATTTGGAAGTTGAAAACCAATGCTTGAGTGTTGATGTATGTATTCCCAATATAAGTGCATCTAGTGATAAGGAACTTTTGATATTCCTTGAAAAGAATTCCGCAGGTTGTATCTGTTCTGTGCACAAGTTTACAAATGTAGGTCAGGATGTTGAAGATAAAGAGAAGTGGGGCAGGATATCATTTCTCTCCCCTGCTGCAGCCAAAAGAGCTACTGAGCTAGATGGAGAGGAGTTTCAAGGCTCACCCCTGAAAATAGTTCATTCACAGGTAACTAGTGGAGGGGATAAAACATTTTCATTCCCTGCTGTTAAAGCCAAATTATGCTGGCCTCGTAGGTTTAGCAAGGGATTTGGCATTCTTAAATGTGAAATAAAGGATGTTCAGTTGATGTTAAAAGATTTCTATAACCTTGCAATAGGAGGGAGGTATGTTCGTTGTGAAGCTAGCAGAAGGAGCTTGGATTGTATTGTGATTAATGGACTTCATAAAGAACTCTCAGAAGCTGAAATTTTAGATGTACTAAGAACTGCTACAAGTAGGAGGATTTTGGATTTTTTCTTGGTGAGAGGAGATGCTGTTGAGAATCCCCCATGCAATGTTTGTGAGGAGGCGCTCCTAAAAGAAATTTCTCCCTTTATGCCTAAAAGGCACCCCCACACTTCTTCTTGCCGTGTTCAGGTGTATTCACCTGAGCCGAAGGATGCCTTCATGAGAGCTTTGATCACTTTTGATGGAAGATTACATTTGGAGGCAGCAAAGGCTTTGGAGCAAATTGAAGGGAAAGCATTGCCTGGTTGTCTTTCTTGGCAGAAGATAAAGTGCCAGCATTTGTTTCATAGCTCCTTGATATTCCCTTTTCCTGTTTATCGTGTGATTAAGGAACCACTGCACAAGTTACTTGCTAGCTTTAGCTGTATAAAGGGTCTTGAGTGGAACCTAGAAATGACTGCTAATGGTTCCTATCGTATCAAACTAACAGCTAATGCCACAAAGACAGTGGCAGAGGTTAGGAGACCCCTTGAAGAACTCACAAGGGGGAAAACCATTGTCCATGTGGATCTCTCTCCTCCAGTTTTCCAACAGCTATTGTCCAGAGATGGCATTAATCTTAAAAACTCAGTACAGCAGGAGACGGCAACATTCATTCTTTTTGACCGGCACAACCTGACTTTGCGGGTATGTGGTTCCCCAGAGAAGATTGAGTTGGCCGAGCAGAAGCTAATTCAGTCTTTACTCACTCTCCATGAAAGCAAGCAGTTAAAAGTCCACCTCCGAGGCAGAGACTTACCTCCTGATTTGATGAAGCAAGTGGTTAAGAATTTTGGGCCAGATCTCCAGGGCCTGAAAGAGAAGATACCAGAGGCTGACTTTACTCTCAACACACGACGACAGATAATCTATGTTCGTGGTAAGATGGAGTTGAAACCAAAAGTAGAGGAATTAATACATGAGATTGCTTGTTCAAGTAACCATTTGGTTGAGAGACTCAGGACTGGACTGGACTGCCCGATTTGCTTGTGTGAGGTGGAGGATGGTTATCAGCTTGAAAACTGCGGTCATCTGTTCTGTCGCATGTGCCTGGTGGAGCAGTGTGAATCTGCTATAAGAAACCAAGGTGGTTTCCCTATATGCTGCACGCATGAGGGCTGCGGGGATCCCATTCTGCTTGTAGATTTGAAAGCTCTTTTATCTAACGAGAAGTTGGAGGAACTTTTTAGAGCCTCATTGGGAGCTTTTGTAGCTTCTAGTGTGGGCAAGTACAGGTTTTGCCCATCTCCTGATTGCCCCTCCGTTTACCGGGTAGCTAGTCCTGAGGCAGCCGGTGAGCCATTTGTCTGCGGAGCATGTTATGCAGAGACATGTACGAGGTGCCACTTGGAGTATCATCCATACATTTCATGTGAGAGATACAAGGAGTTCAAGGAGGATCCAGACTTATCCCTCAAGGAATGGTGCAAAGGGAAAGAACATGTCAAAACCTGTCCTGCATGTGGCTATACAATTGAGAAGGGAGAAGGGTGCAACCACATTGAGTGCAAGTGTGGGAAGCATGTGTGCTGGGTTTGCCTGGATTTCTTTGGAACTAGTGAGGATTGTTATAACCATTTAAGCACTATACACTTGGCTATCATATAA 5214 0.4377 MRKAYRPINHTGFPRNPEFLRNSHPPSNFRSPWKPEFRPNQRLDRPPENFPHARRPNFVVLLRSGRRDFTRADVVDLIAKCKSQPESSSVFPGDHVAARLNFFQWCDALEAFVFFWEFCLNEVHGFTPELKSHVLVPSDMDELRDRLRTIFACHVKGLMEGKEVKRWREESERASKEIAHLTYSLKRPKSFGALDDLREKRKGLDSEKKLIERRIKEFQSAMECILRHLEDSKVDEDGISVFRKLKFDETSDWRRIHRMVMRERRRLEEGLPIYAYRRDILQEIHSQQIMVLVGETGSGKSTQLVQFLADSGIGASESIICTQPRKIAARSLALRVQEESSGCYEDNPIKFYPTFSSSNKFNSGIIFMTDNCLLQQYMSDDNLSGISCLIIDEAHERSLNTDLLLALIKSLLCRRVEMRLIIMSATADAKQLSDYFYGCGIFHVVGRNFPVDVRYVPSAYAGHSGPTIVASYASDVVRMATEVHRTEKEGTILAFLTSQMEVEWACEKFDALSAVALPLHGKLSPEEQLCVFQDVPLKRKVIFATNLAETSLTIPGVKYVIDPGFVKDSRYEPGSGMNVLKVCWISQSSANQRAGRAGRTEPGRCYRLYSEFDYNSMAPNQEPEIRRVHLGVAVLRILALGVKNVLDFDYVDAPSPSAIDMALRNLSQLGAIRLNNNNYELTEEGRYLVKMGVEPRLGKLILSCCQYSMVKEGLTLAAVMANASSIFCRVGNEDDKQRSDCRKVQFCHCDGDLFTLLSVYKEWEALPRERKNKWCWENSINAKSMRRCQDAIKDLESCLEYELDVVTPSYWRWDPHNSSDCDKYLKKAILSSLSENVAMYSGCLQHGYEVALTGQLVQLHPSCSLLVFSEKPSWVVFGEILSASSQYLVCVSSFDFESICTLDPPPLFDVFLMERKKLQMKMWTDLGCILLKRFCGKGNCNLFGLASRIRTACRDDRIFIEVNVDQNEIQLYASSGDMELAIAMVNEALEYEEKWLRTECLEKCLYHGSGVSSPVALFGSGAEIKHLEVENQCLSVDVCIPNISASSDKELLIFLEKNSAGCICSVHKFTNVGQDVEDKEKWGRISFLSPAAAKRATELDGEEFQGSPLKIVHSQVTSGGDKTFSFPAVKAKLCWPRRFSKGFGILKCEIKDVQLMLKDFYNLAIGGRYVRCEASRRSLDCIVINGLHKELSEAEILDVLRTATSRRILDFFLVRGDAVENPPCNVCEEALLKEISPFMPKRHPHTSSCRVQVYSPEPKDAFMRALITFDGRLHLEAAKALEQIEGKALPGCLSWQKIKCQHLFHSSLIFPFPVYRVIKEPLHKLLASFSCIKGLEWNLEMTANGSYRIKLTANATKTVAEVRRPLEELTRGKTIVHVDLSPPVFQQLLSRDGINLKNSVQQETATFILFDRHNLTLRVCGSPEKIELAEQKLIQSLLTLHESKQLKVHLRGRDLPPDLMKQVVKNFGPDLQGLKEKIPEADFTLNTRRQIIYVRGKMELKPKVEELIHEIACSSNHLVERLRTGLDCPICLCEVEDGYQLENCGHLFCRMCLVEQCESAIRNQGGFPICCTHEGCGDPILLVDLKALLSNEKLEELFRASLGAFVASSVGKYRFCPSPDCPSVYRVASPEAAGEPFVCGACYAETCTRCHLEYHPYISCERYKEFKEDPDLSLKEWCKGKEHVKTCPACGYTIEKGEGCNHIECKCGKHVCWVCLDFFGTSEDCYNHLSTIHLAII 1737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00788 1737 Pfam Helicase conserved C-terminal domain 484 600 IPR001650 -
Accr8g00788 1737 MobiDBLite consensus disorder prediction 1 49 - -
Accr8g00788 1737 Coils Coil 194 214 - -
Accr8g00788 1737 SMART helicmild6 503 601 IPR001650 -
Accr8g00788 1737 SUPERFAMILY RING/U-box 1681 1728 - -
Accr8g00788 1737 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 475 641 IPR001650 -
Accr8g00788 1737 CDD BRcat_RBR 1612 1663 - -
Accr8g00788 1737 PANTHER ATP-DEPENDENT RNA HELICASE 233 895 - -
Accr8g00788 1737 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 387 396 IPR002464 -
Accr8g00788 1737 CDD Rcat_RBR_DEAH12-like 1684 1733 - -
Accr8g00788 1737 Gene3D - 230 447 IPR027417 -
Accr8g00788 1737 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 448 620 - -
Accr8g00788 1737 SMART ha2_5 661 757 IPR007502 GO:0004386
Accr8g00788 1737 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 254 447 - -
Accr8g00788 1737 Gene3D - 1658 1734 - -
Accr8g00788 1737 FunFam RBR-type E3 ubiquitin transferase 644 750 - -
Accr8g00788 1737 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 281 445 IPR014001 -
Accr8g00788 1737 ProSitePatterns Zinc finger RING-type signature. 1544 1553 IPR017907 -
Accr8g00788 1737 CDD DEXHc_RHA-like 288 444 - -
Accr8g00788 1737 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 269 778 IPR027417 -
Accr8g00788 1737 ProSiteProfiles Zinc finger RING-type profile. 1528 1570 IPR001841 -
Accr8g00788 1737 CDD SF2_C_RHA 449 609 - -
Accr8g00788 1737 Pfam Helicase associated domain (HA2) 662 756 IPR007502 GO:0004386
Accr8g00788 1737 Gene3D - 645 750 - -
Accr8g00788 1737 ProSiteProfiles TRIAD supradomain profile. 1524 1732 IPR044066 -
Accr8g00788 1737 Pfam IBR domain, a half RING-finger domain 1605 1660 IPR002867 GO:0008270
Accr8g00788 1737 SUPERFAMILY RING/U-box 1610 1666 - -
Accr8g00788 1737 SUPERFAMILY RING/U-box 1526 1603 - -
Accr8g00788 1737 Gene3D - 448 621 IPR027417 -
Accr8g00788 1737 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1656 1734 - -
Accr8g00788 1737 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 825 895 IPR011709 -
Accr8g00788 1737 SMART ultradead3 269 454 IPR014001 -
Accr8g00788 1737 SMART ibrneu5 1661 1725 IPR002867 GO:0008270
Accr8g00788 1737 SMART ibrneu5 1595 1660 IPR002867 GO:0008270
Accr8g00788 1737 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1524 1604 IPR013083 -
Accr8g00788 1737 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1524 1605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00788 Accr-Chr8 13951913 13958415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00788 1523 1719 C3H Transcription Factor Family AT2G31770 26.667 1.80e-13 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00788 K12818 - gmx:100810008 2506.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00788 8 13951913 13958415 Accr8g00788 8 13951913 13958415 ECH