Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00787 ATGAAGAGATCACTTGAAAGCTCCGATTCATTGGGTGCTTTGATGACTATGTGCCCATCCAGAGATGAAAACAGTCCGAGGAACGATAACAATAATAATCATGTGTATGGGAGGGATCATCAGTTCCAAGCCATGATGATGGATGGAGTAGTGGACGAGGAAGGTTGTGTGGAAGAATCAAGCCATTTGATGATGTCGGAGAAGAAACGTCGTCTGAGTGTTGACCAAGTCAAAGCTTTAGAGAAGAACTTCGAGGTCGAAAACAAGCTTGAGCCAGAGAGGAAAGTGAAGCTTGCTGAAGAACTTGGGTTACAGCCTCGTCAAGTCGCCGTTTGGTTCCAAAACCGCCGTGCACGGTGGAAGACCAAGCAGTTAGAGAGAGATTACGGCGTTCTTAAAGCTAGTTATGACAGCCTCAAAGTTAACTTGGATACTCTTCAACAGGACAACGAAGCATTGCTCAAAGAGATTAAGGAATTGAAATCTAGATTACAAGAGGAGCAAACAGAGAGTGGTATTTCAGTGAAGGGAGAGGAGATAACAGGGTCTGATTCCGACGAGATGAAGGCTGACCGGAGTGAAGCACCGCCGGCTGAAACCTCCATTCTTATTGAATCACAGTGCAAGGAGGACTTTAATTATGGGTGCTTCAATGGAGTTGCCGGAGGTGGTGGTGGTGCTTCACTCGTGGCGATGGTGGATCATTTCAAAGACGGAGCTTCTGATAGCGACTCTAGCGCAATCTTGAACGAAGATAACAGTCCCAACGCGGGCATTTCGTCGCCGGAAGCTCTTCAGGGCCACCACCACCATCTTTTGATTTCTCCATCGTCTCCGCCGCTTTCCATGAACTGCTTTCAATTCCAGAAATCAACATACCAGAGTCAGTATGTTAAGATGGAAGAACATAACTTCTTCAGCGCCGAAGAAGCCTGCAATTTCTTCTCCGAAGATCAAGCACCCACACTCCATTGGTACTCTTCAGATAATCAGTGGAGCTAA 1002 0.4661 MKRSLESSDSLGALMTMCPSRDENSPRNDNNNNHVYGRDHQFQAMMMDGVVDEEGCVEESSHLMMSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAEELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKASYDSLKVNLDTLQQDNEALLKEIKELKSRLQEEQTESGISVKGEEITGSDSDEMKADRSEAPPAETSILIESQCKEDFNYGCFNGVAGGGGGASLVAMVDHFKDGASDSDSSAILNEDNSPNAGISSPEALQGHHHHLLISPSSPPLSMNCFQFQKSTYQSQYVKMEEHNFFSAEEACNFFSEDQAPTLHWYSSDNQWS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00787 333 MobiDBLite consensus disorder prediction 165 198 - -
Accr8g00787 333 Coils Coil 136 170 - -
Accr8g00787 333 CDD homeodomain 68 124 IPR001356 GO:0003677
Accr8g00787 333 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 38 253 IPR045224 GO:0003700
Accr8g00787 333 MobiDBLite consensus disorder prediction 242 263 - -
Accr8g00787 333 MobiDBLite consensus disorder prediction 21 35 - -
Accr8g00787 333 PRINTS Lambda-repressor HTH signature 103 119 IPR000047 GO:0003677
Accr8g00787 333 PRINTS Lambda-repressor HTH signature 94 103 IPR000047 GO:0003677
Accr8g00787 333 MobiDBLite consensus disorder prediction 243 261 - -
Accr8g00787 333 SUPERFAMILY Homeodomain-like 60 125 IPR009057 -
Accr8g00787 333 MobiDBLite consensus disorder prediction 180 194 - -
Accr8g00787 333 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677
Accr8g00787 333 Gene3D - 50 127 - -
Accr8g00787 333 SMART HOX_1 66 127 IPR001356 GO:0003677
Accr8g00787 333 Pfam Homeobox associated leucine zipper 123 165 IPR003106 GO:0006355|GO:0043565
Accr8g00787 333 Pfam Homeodomain 68 121 IPR001356 GO:0003677
Accr8g00787 333 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981|GO:0006355
Accr8g00787 333 MobiDBLite consensus disorder prediction 1 35 - -
Accr8g00787 333 FunFam Homeobox-leucine zipper protein HAT5 61 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00787 Accr-Chr8 13840076 13841444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00787 1 332 Homeobox Transcription Factor Family AT2G22430 45.869 7.09e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr8g00787 Homeodomain 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00787 K09338 - cave:132165516 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00787 8 13840076 13841444 Accr8g00787 8 13840076 13841444 CCT
Accr8g00787 8 13840076 13841444 Accr8g00787 8 13840076 13841444 ECH