Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00682 ATGGACTTGACTGCGAAGCTTCATCACCTTGAGCTCGGTTCAAGCTTCCTCACCGGCACACGGAAAGCCGCTGTACGACCTTACATTCGGCCTGCTTCAAATCTTGTGGTTTCTCAAACCCTTAGAGGGAATACTAATTTAGTTAAATCCACTCAATTTATTGGTCCTGGAAGAGCGAATTTGAGTATCGCTGCGAGTTCATCTGTGGTTGCCGTCGAGACATCGGCTGCAGAATCCACTACCGAAGAGGACATTGAGTCTTTGTTTTCGGACTCTTCGGTTGATGAATATAAGAATAAACGTGTAAAAAAGCAATCCAATACCGGTGCGTCGAGCATTTCATCTGGTGTGAGGTTAGAGAATGTGAGCAAAACCTACAAGGGCGTCACTGTCTTGAAAGATGTTACTTGGGAAGTGAAAAAAGGTGAAAAAGTGGGATTGGTTGGTGTAAATGGTGCAGGTAAGACGACACAGATGAGAATTATTGCTGGTCAGGAGGAGCCAGAATCGGGGAATGTTATAAAAGCCAAACCAAATATGAAAATTGCTTTTCTGAGTCAGGAATTTGAGGTAGGTCTGAGTAGGACCGTGAGGGAGGAATTTCTAAGTGCATTTAAGGAGGAGATGGGGATAGCGGGGAAGTTGGAGAAGGTGCAGAAGGCACTCGAGGGTGCTGTGAACGATTTAGAATTGATGGGGAGGCTTTTAGATGAGTTTGATTTGCTTCAGAAGAAGGCCCAGGCAGTGAACTTGGATACAGTGGATGCGAAGGTGAGCAAATTGATGCCAGAGCTTGGGTTTTCTTCAGATGATTCAGACAGGCTGGTGGCGTCATTTAGCAGTGGATGGCAGATGAGGATGTCCCTGGGAAAGATTTTACTTCAGGAGCCAGATTTACTACTGTTGGATGAACCAACAAATCACCTTGACCTTGACACCATTGAGTGGTTGGAAGAGTATCTTAACATGCAAGAAGTGCCTATGGTCATCATTTCCCATGACAGAGCTTTTCTTGATCAACTGTGTACAAAAATTGTGGAAACTGACATGGGTGTATCCAGAACATATGAGGGCAATTATTCCCAGTATGTCGTTTCAAAGGCAGCATGGATTGAAACACAGAATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAGCAGACAAAGGACTTAATAAACAGGTTAGGTGCAGGAGCAAATTCTGGCCGTGCTTCAACTGCTGAGAAGAAGTTGGAGAGACTTGAAGAAGAGGAACTAGTAGAGAAGCCATTTCAACGGAAACAAATGAAAATCAGGTTCCCTGAGCGTGGAAGAAGTGGAAGATCCATTGTAACAATTAAGAACTTGGAATTTGGCTTTGAGGATAAAGTGCTCTTCAAGAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCATTATTGGTCCAAATGGATGTGGCAAGAGTACTTTGCTGAAGCTCATAATGGGTTTAGAGAAGCCAAATGGGGGTGAAGTTGTGCTTGGGGAGCACAATGTATTGCCAAACTATTTTGAGCAAAATCAGGCTGAGGCACTTGATCTGGAGAAGACAGTGCTTGAGACAATAGAAGAAGCTGCCGAGGACTGGAAGATTGATGATATTAAAGGACTTCTTGGGCGTTGTAATTTCAAATCTGATATGCTTGACCGTAAAGTTTCCCTATTGAGTGGTGGTGAGAAGGCACGTCTGGCTTTTTGCAAATTTATGGTAACACCGTCAACTATGCTTGTGTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTTGAGGAGGCAATAAATGAGTACCAGGGCACTGTTATTACAGTGTCTCACGATAGATACTTCATAAAGCAGATAGTTAATAGAGTCATAGAAATTAAAGATGGAACTATACAGGATTATGCTGGTGACTATAATTACTATTTAGAAAAGAATCTTGATGCTAGAGCTAGAGAGCTTGAACGTGCGGCTGAGCTTGATGAGAAAGCTCCGAAAGTGAAAGCCAAATCCAAGATGTCAAAGGCTGAGAAAGAAGCACGGAAGAAACAGAAGATGCAGGCTTTTCAGGCAGCAAAGCAGAAATCTAAAGGGTCAAAAAATGCCAAGAGATGGAATTGA 2136 0.4298 MDLTAKLHHLELGSSFLTGTRKAAVRPYIRPASNLVVSQTLRGNTNLVKSTQFIGPGRANLSIAASSSVVAVETSAAESTTEEDIESLFSDSSVDEYKNKRVKKQSNTGASSISSGVRLENVSKTYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQMRIIAGQEEPESGNVIKAKPNMKIAFLSQEFEVGLSRTVREEFLSAFKEEMGIAGKLEKVQKALEGAVNDLELMGRLLDEFDLLQKKAQAVNLDTVDAKVSKLMPELGFSSDDSDRLVASFSSGWQMRMSLGKILLQEPDLLLLDEPTNHLDLDTIEWLEEYLNMQEVPMVIISHDRAFLDQLCTKIVETDMGVSRTYEGNYSQYVVSKAAWIETQNAAWEKQQKEIEQTKDLINRLGAGANSGRASTAEKKLERLEEEELVEKPFQRKQMKIRFPERGRSGRSIVTIKNLEFGFEDKVLFKKANLTIERGEKIAIIGPNGCGKSTLLKLIMGLEKPNGGEVVLGEHNVLPNYFEQNQAEALDLEKTVLETIEEAAEDWKIDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVTPSTMLVLDEPTNHLDIPSKEMLEEAINEYQGTVITVSHDRYFIKQIVNRVIEIKDGTIQDYAGDYNYYLEKNLDARARELERAAELDEKAPKVKAKSKMSKAEKEARKKQKMQAFQAAKQKSKGSKNAKRWN 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00682 711 ProSitePatterns ABC transporters family signature. 279 293 IPR017871 GO:0005524|GO:0016887
Accr8g00682 711 Gene3D - 114 399 IPR027417 -
Accr8g00682 711 Coils Coil 671 700 - -
Accr8g00682 711 CDD ABCF_EF-3 117 347 - -
Accr8g00682 711 SMART AAA_5 141 351 IPR003593 GO:0016887
Accr8g00682 711 SMART AAA_5 468 636 IPR003593 GO:0016887
Accr8g00682 711 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 116 703 - -
Accr8g00682 711 Pfam ABC transporter 346 433 IPR032781 -
Accr8g00682 711 Coils Coil 649 669 - -
Accr8g00682 711 Gene3D - 406 673 IPR027417 -
Accr8g00682 711 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 444 659 IPR003439 GO:0005524
Accr8g00682 711 MobiDBLite consensus disorder prediction 664 711 - -
Accr8g00682 711 MobiDBLite consensus disorder prediction 664 691 - -
Accr8g00682 711 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 117 375 IPR003439 GO:0005524
Accr8g00682 711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 651 IPR027417 -
Accr8g00682 711 ProSitePatterns ABC transporters family signature. 563 577 IPR017871 GO:0005524|GO:0016887
Accr8g00682 711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 360 IPR027417 -
Accr8g00682 711 FunFam ABC transporter ATP-binding protein 404 671 - -
Accr8g00682 711 CDD ABCF_EF-3 444 636 - -
Accr8g00682 711 Pfam ABC transporter 460 591 IPR003439 GO:0005524
Accr8g00682 711 Pfam ABC transporter 132 307 IPR003439 GO:0005524
Accr8g00682 711 FunFam Putative ABC transporter ATP-binding component 118 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00682 Accr-Chr8 11021657 11027210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00682 441 661 Calmodulin-binding Proteins AT2G36910 26.316 1.08e-13 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00682 - - qsa:O6P43_030405 1075.85