Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00648 ATGATCAAGCTTCTCTTCCCTAAAAATGTCACTATTATATCATCTTTTTGTTCCTCCTCGGCATTACCTCGGCCTCTTCTCCTCCAAATTTGTCACTTCTCAGCGTCGTCATATAATCATTCATTCTTGAGACCCCGTGATGACGAAACACGAGATGATCGAAATGTACCAATTTCAGTGTGGTGGGAGTTCGATAGTTGTAATTTACCTGCTGATGTCAATGGTTATAGAATCACACACTGGCTAACAGAAGCTCTTAGGGCCAAAGGGATGAAGGGGCCACTTCAAATCAAGGCTTTTGGTGATGTCTTGCGACTCTCAACTGCCAATCAGGAAGCTCTCTCTTCCACTGGAATAAATTTGGTCCACATTCCCGATGGTGGTAAAAATCCTGCTCATGGATCTCTTCTTGTTGATCTTATGCATTGGGTCTCTAAAAATCCTCCACCAGCACATCTGTTTTTGATTACTGATAACAGGGCTTTTGCTGATATGTTGCACCGTTTAAGATTGGATAACTACAATATCTTGCTCGCAGCACCAGCAAGGGCTCCTAATGTTCTCTGCAATGCAGCTACTATAATGTGGCACTGGAATTCATTAATTACGGGAGAAAATCTTGATGGAAAACACTTTAATAATCCTCCTGATGGTTTGGATGGTTCTTGGTATGGGTACCATAAGGTGACTCTTGAAGACCCTTTCTTGGATGGTGAGCAGTCACAGGTTGAGGAGATGTCTGCACCTATCTCAGATTTGGAATTACGCACAGTTCCAAAGGCAGTTGTGAGGCAAGTTCGAGAAATATTGAACTTATACCCAACAGGTATCTCTGTAACAGACATTCGAGCAGAGATAGCAAAAGCTGGTATTTTCTTGGATAAAAACTACCATGGTCATAAAAAGTTTACCCGCTTTCTTTTATCAGTAGCAGATGTACAACTTCGGCCTGGACCTGATAAATCACTTTTTGTTCATCCCATCCCCCAAAAATGTACGGGACCCTTTGATAGCAGTTCTGTATCATCAACAGTATCTGATTATGGTAAGGAGTCGAACCAGGTGGCTCCTTCAAAGTCAAGTGGTGAGGTAAAAAAAGTGGTAGGGGATGCAGATTTGAAGCCATCAACAGTATCTGTTGATGTTGAGATGAACCAACTGGCTACTTCAAAGTTAAGTGGTGAGGTGGAAAAGTCGTTTGGGGATGCAGATGTGAAACCTTCAATGAATTCATCTCAGGTCCCAGAAAAGGTCCAACAGGTTGTGGATGTGGTTAGTACATATACAACTGAGAGTCAATTGCCTCTGAAGGAGAATGAAATTTTTAGCTCTAGTGATGTAAGTCTTAGTGCCACAGAGAAAAACACAACTTCAGAGAATTACTCTACCGAACAAAGCAAAACAGTTTCAGACAAGAATGCCTCTTCAAATGATATTTCTGGAGAGTTAAAAGCTGAGGACAAGTATGACAAATCCACAATAAAGGAATCTGATGCAGTTTGTCACGTTGCTCATTCTTTGCCTGTTGATGATTGCGTGACTGACAAAAGCATTGGTGAAAGCATTGAAACTAACAGCAAAAATTTTGGCAAACGTCGAAGTTTCTTTGCTTGGATTAGCAGCTGGTGGCCAATCAGGAAAAATCGTAGAAACTCAAATAATTTGACTGATCAACCGAATGAGATGCTTAGTAATATTGAAGAGCCCAAGGTTTCAAACCTGAACCAGACAACCTGTCATTCTGAAGAGTCTGAGTCGTCAGATCTGAAACAAACAGTTTGTCATTCTGAAGAGTCTGAGTTCACTGAACAGAAACAAACAGTTAGTCACTCTGAGGAGCCAAAGTTATCTGAACCGAGACAGAAAGTGAATTATTATGTAGAGCCCGAGTTATTTTCTAGTGGCACCTTTTGGAGTGACATGGAATCTTTTGTTTTTTCTGGCAAAGGATCAACTCTAATCTCGCGTTCTAAAAACAGGAAGGATCTGATGCAGAAAATTCAGAAGTATGGACCCCAGGTTCTTAGTTCGCTCAGTGAAAATGATCTCCTTCAACTGGGGAATATGTTGATATCTAAGAAAAAATGGTTGGAGGAAAGACCTTTTCTGACTCTTCCTTTCCTGGTCAGTCTACAAGATAGGAAGAAAGCTGTGGGCCTATCACATGGTGCAACTGGTTTAAGATCTCTTTTTCTAATCAAAGAAGCACAGAACAACTTTCAAAAATCATCGGATGGTGATATCGATAAAAGATATCAGAGTATTCCTCAAGCTGGAGTTTCTTCACCTGCCATTAAAAATAGGCACACTGAAAAGTCTAGAACTGACATATTAGCAGATATTCAGAAACTTGTGAGTGACATAGTGAGGGAACACTCAGATGGATATAATATGGGTATGATACCAAAACTTTTTCTGGAGAGGTATGGCTATCCTCTTGATGCTCAGAAGCTTGGTTATCAAAAGTTGGCAACCTTGTTACAGATTGTGCCTGGAGTGAAAGTTGAGTCTTCTTACATTTTTCCTGTTGGTCATCCCGCTTTTTCTGCTGACATGGAAATGTCAACTCTCAATACTTCAGTGAACAATTCAAGTGGTGTAGTGTTGGATTCTGATAGAGAATCATCTGATTCATGCCGTAAAGAAGATCGCAAAGACACTGCATGGGAGGAATTAGGACCTGTCTCAATTAGCAATCCCAAACAGAGCGACTTGGAAACAAAATCAAGGGAAAAGGCTTTAAAGCTGGAGACCTCAATACATCCTCATTATGAACCTTCAGTTTCTGATGATGATTCTTCTGAATCTGAAGGAGATAGCTCTTGTCTAACTCAATCAGAAGAGGAGGTACGGTCAAAACATAATGTGGAAGACAGTTCTCTTTTGCAAACTCTGGAGTCATTTTACAGAAGCCAAGAAGAGGGTGGTGTGCAGTCAGAAAACACTGACACCAAAGGCAATGGTCTGACTGGTGGTTTAAATCCATCCAGGCACTCCACTCCAGGAGTGCTTTCCAAAACTCATTCAGGGGCAGTGCATAAAGAAAAGCAAAGACCTCACAAGAGCTATTCATTTGTTGCAGACCCAGACTCACGAAAGAAGGACGAGCTGATCGATGGAATATTACAAAATTTGAGGAAATCAGATGAGTTGAGGATGCGAAGTTGA 3168 0.4107 MIKLLFPKNVTIISSFCSSSALPRPLLLQICHFSASSYNHSFLRPRDDETRDDRNVPISVWWEFDSCNLPADVNGYRITHWLTEALRAKGMKGPLQIKAFGDVLRLSTANQEALSSTGINLVHIPDGGKNPAHGSLLVDLMHWVSKNPPPAHLFLITDNRAFADMLHRLRLDNYNILLAAPARAPNVLCNAATIMWHWNSLITGENLDGKHFNNPPDGLDGSWYGYHKVTLEDPFLDGEQSQVEEMSAPISDLELRTVPKAVVRQVREILNLYPTGISVTDIRAEIAKAGIFLDKNYHGHKKFTRFLLSVADVQLRPGPDKSLFVHPIPQKCTGPFDSSSVSSTVSDYGKESNQVAPSKSSGEVKKVVGDADLKPSTVSVDVEMNQLATSKLSGEVEKSFGDADVKPSMNSSQVPEKVQQVVDVVSTYTTESQLPLKENEIFSSSDVSLSATEKNTTSENYSTEQSKTVSDKNASSNDISGELKAEDKYDKSTIKESDAVCHVAHSLPVDDCVTDKSIGESIETNSKNFGKRRSFFAWISSWWPIRKNRRNSNNLTDQPNEMLSNIEEPKVSNLNQTTCHSEESESSDLKQTVCHSEESEFTEQKQTVSHSEEPKLSEPRQKVNYYVEPELFSSGTFWSDMESFVFSGKGSTLISRSKNRKDLMQKIQKYGPQVLSSLSENDLLQLGNMLISKKKWLEERPFLTLPFLVSLQDRKKAVGLSHGATGLRSLFLIKEAQNNFQKSSDGDIDKRYQSIPQAGVSSPAIKNRHTEKSRTDILADIQKLVSDIVREHSDGYNMGMIPKLFLERYGYPLDAQKLGYQKLATLLQIVPGVKVESSYIFPVGHPAFSADMEMSTLNTSVNNSSGVVLDSDRESSDSCRKEDRKDTAWEELGPVSISNPKQSDLETKSREKALKLETSIHPHYEPSVSDDDSSESEGDSSCLTQSEEEVRSKHNVEDSSLLQTLESFYRSQEEGGVQSENTDTKGNGLTGGLNPSRHSTPGVLSKTHSGAVHKEKQRPHKSYSFVADPDSRKKDELIDGILQNLRKSDELRMRS 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00648 1055 PANTHER LIMKAIN B LKAP 52 743 IPR024768 GO:0005777|GO:0010468
Accr8g00648 1055 ProSiteProfiles OST-type HTH domain profile. 777 851 IPR025605 -
Accr8g00648 1055 Pfam OST-HTH/LOTUS domain 260 321 IPR025605 -
Accr8g00648 1055 Pfam OST-HTH/LOTUS domain 779 836 IPR025605 -
Accr8g00648 1055 CDD LOTUS 778 835 - -
Accr8g00648 1055 MobiDBLite consensus disorder prediction 445 480 - -
Accr8g00648 1055 MobiDBLite consensus disorder prediction 861 1035 - -
Accr8g00648 1055 MobiDBLite consensus disorder prediction 335 363 - -
Accr8g00648 1055 MobiDBLite consensus disorder prediction 1009 1035 - -
Accr8g00648 1055 Pfam NYN domain 58 192 IPR021139 GO:0004540
Accr8g00648 1055 MobiDBLite consensus disorder prediction 573 618 - -
Accr8g00648 1055 MobiDBLite consensus disorder prediction 873 890 - -
Accr8g00648 1055 MobiDBLite consensus disorder prediction 335 360 - -
Accr8g00648 1055 Gene3D - 772 839 IPR041966 -
Accr8g00648 1055 ProSiteProfiles OST-type HTH domain profile. 258 329 IPR025605 -
Accr8g00648 1055 MobiDBLite consensus disorder prediction 957 1006 - -
Accr8g00648 1055 MobiDBLite consensus disorder prediction 904 930 - -
Accr8g00648 1055 MobiDBLite consensus disorder prediction 583 618 - -
Accr8g00648 1055 CDD PIN_limkain_b1_N_like 57 181 - -
Accr8g00648 1055 MobiDBLite consensus disorder prediction 445 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00648 Accr-Chr8 10182755 10186548 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00648 59 204 C2H2 Transcription Factor Family AT5G61190 41.096 2.93e-30 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00648 - - pcin:129308480 1564.67