Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00647 ATGGTTAGACGCGTGCTTTCCAAAAATATCTTTATTTTCTCATCCATTTCTTGTTCATTATCGTCAGTTCGTCCTCTTATCTTTCAAATTTGTCACTTCCCTAGCTCGTTGAATAGCTCCTCATTACTTAGACGCCATTATCATGAATCCCGAAATATACCAGTCTCAGTTTGGTGGGATTTTGAGAATTGCCATCCACCTTCTGATGCGAATGTTTTTAGAATTCATCACTTCATAAAGGAGGCAGTTAGAGCCAAAGGGATCATGGGACCTCTTAAAATTAGGGCATTTGGTGATGTTTATCAGCTCCCAAGGGCTCACCAGGAAGCTCTCGCGTCCACTGGGATCAAAATCATCCACGTTCCTAAAGGTGGAAAGAATAGTGCTGATAAATCTCTTCTTATTGACCTCATGTTTTGGGTGTCCCAAAATCCTCCTCCTGCGCATTTGTTTCTAATTTCAGGCGATAAGGATTTTGCTGAAGTATTGCACCGTCTGAGAATGAATAACTACAACATCCTAATTGCTGGTATAGAGACTTCTTATCTTCTCTGCAATGTAGCAACTATAGTGTGGCACTGGAATTCATTACTTAGAGGAGACAGTCTTGATGGAAAACATTTCAATCATCCTCCTGATGGTTTGTATGGTTCTTGGTGTGATCATCATGATGCAACTGTTGAAGACGATTTCTTAGATGGAAAGCAATTTACACGTTCACAAACTCAGGAATTCCCTAAACCTACTTCAGGTTGGAACGTGCGCCCAATTCCAAAGGAGGTTGTGCGGCAGCTTTATCAGATATTGAAATTGTATCCAAATGGCATCTCTTTATCACTTCTTCCAACTCTGTTGGAAAGAGCTGGTATCTACCTGGATGAAGATTACTATGGATATAAAAGGTTTTCCCTGTTCCTTTCATCAGTGGCGTGTGTATGTCTTCAGTATCATCCTGATAGAGGACTTGTTGCACATTACGTCCCCAAAGAATATCCAGAACCCATTGAAAGCAGTTTTGTACCATCCACAGAATTAGTTGAAAATGAGGAGTTGAATCATGTGGCTACTTCAACAGAATTAGATGATACTTCTGAAAAGTTAAATGCTGATGACAAATATGCTGAGCCAGCAAAAAAGGAACCTCTGACTTTCTTGGGTTGGATTAAAAGTTGGTGGCCATTCAGGAAAAAAGTTGGAAACACTCATAATTTGACTGCTCATGGGAATGAGATGGTTAGCAATGCTAAAGAGCCTGAGTTGTCAAATCTGAAACGGAGGGTTAGTCATTCTGAAGAGCTCCAGTCATTAAAACAGAGACAAATGGCTAGTCAATTTAAGGAGCCTGAGTTATCAGAACTGGGGCAGATGGTGAATCATTATGGAGAGCCGGCTATATTTTCTTGTAGTTCCTTTTGGAAGGAAGTGGAATGTTTTGTTTTCTCCTCTAAAGGAACAATTCTTGTATCCCACTCAAGAAGCAGGAAGGATATGACGCTCAGTTTTAAAAAGTATGGACCCCATGTTCTCCACTCTCTTAGTGAAAATGATCTCCTTCTATTGGTGGATTTGCTAATATCTGAGAAAAAATGGTTGGAGGAAAGGCCTTCTCAGACTTTTCCTTTCTGTGCCATTCCAAGTAGAACAACACGAAGTAACTTGCAAAAATCATCAGAATTTGAAGTTGATCAAAATCAGAGTATTCCTCATGCTGGGGTTTCTTCACCTGCCACTCGAAAACGACACACTAAAAAGTCTAGAATTGACATTTTAGCAGATGTTAAGAAACTTGTGCGTGAGCTGTTGAGAGAATTCCCAGATGGTTGTAATATGGGTCTCATACCAACTCGCTTTCAGGAGAAGTATGGCTATCCTTTAGATCTTGGGAGGCTTGATTATTCTAAGTTATCTCTCCTTATACAGAGCTTGCCTGGGGTAAAAACAGAGTATTCTCATTTCTTTCCTGCAAATTATGGCTTACGTATTTCTGGTAAGGAAACTTCAACTCTCAAAACTCAACAGACACAACCAAGTGATGTAGTGTACCACTATTCAGAGAATGAGTTCTATGATTCACACTCTGAAGATGATCGAAAAGACTCCCCATGGGAAGAATTAGGACCTGTTTCTGTCAGCAATTCCAATGAGAGTGACCTGGAATTAGAACCAAGTGAGAAAGCAATAGAACTGAAGACCGCAGTAAATCCAAATTATGAACCTGATTTCTCTGAGGATGATTATTCCGAACTGGGAGGAGGAGATAACTCCTGTTTAACTCAATCAGAGTATGATCATGTCTTTCCTGCAAATCATGGCACGCGTGATTCTGGTAAGGAAACTTCAATTCTTAAAACACAGGAGACAGACCTAAATGATGTAGTGTGCCGCTATTCAGAGGATGAATTTTATGATTCATCCTCTGAAGATGATCGGAAAGACCCCCCATGGGAGGAATCAGGACCTGTTTCTGTCAGCAATCCTGATGAGAGTGACCTGGAGTCAAAACCAGGCCAGGAAGCTTTAGAGCTGAAAACCGCAATAGATCCTGATTATGAACCTGATCTCTCTGACGATGATTCTTCTGATTCTGGAGGAGATCATTCCTGTTTAACTCAATCAGAAGGGGAAGGTGAGCCGAAACTCAATGGGGAAGACAGTTCTTTGCAAAATCTGGACTCAATCTATGGCAGTCAAGAAGGAGAGGATAGTGTGAATCAGAAGAAGGCCAATACAGAAGGCATTGGTCCGGCTGATGGTTTAAATGCACCATGGATTTCCACTCCTGCTACCAGTTCAGGAATTCATTTAGGGAGCTATAAAGAGAAGCACAAGCATAAGAAAAACTCTTCATTTGATGATGAACCAGTATCACACCAGAATAAGGAGCTGATTGAAGGGATATTACGATGCCTGAAAAGGGCAGATGACGTGAAGATGCCAAATTGA 2943 0.4088 MVRRVLSKNIFIFSSISCSLSSVRPLIFQICHFPSSLNSSSLLRRHYHESRNIPVSVWWDFENCHPPSDANVFRIHHFIKEAVRAKGIMGPLKIRAFGDVYQLPRAHQEALASTGIKIIHVPKGGKNSADKSLLIDLMFWVSQNPPPAHLFLISGDKDFAEVLHRLRMNNYNILIAGIETSYLLCNVATIVWHWNSLLRGDSLDGKHFNHPPDGLYGSWCDHHDATVEDDFLDGKQFTRSQTQEFPKPTSGWNVRPIPKEVVRQLYQILKLYPNGISLSLLPTLLERAGIYLDEDYYGYKRFSLFLSSVACVCLQYHPDRGLVAHYVPKEYPEPIESSFVPSTELVENEELNHVATSTELDDTSEKLNADDKYAEPAKKEPLTFLGWIKSWWPFRKKVGNTHNLTAHGNEMVSNAKEPELSNLKRRVSHSEELQSLKQRQMASQFKEPELSELGQMVNHYGEPAIFSCSSFWKEVECFVFSSKGTILVSHSRSRKDMTLSFKKYGPHVLHSLSENDLLLLVDLLISEKKWLEERPSQTFPFCAIPSRTTRSNLQKSSEFEVDQNQSIPHAGVSSPATRKRHTKKSRIDILADVKKLVRELLREFPDGCNMGLIPTRFQEKYGYPLDLGRLDYSKLSLLIQSLPGVKTEYSHFFPANYGLRISGKETSTLKTQQTQPSDVVYHYSENEFYDSHSEDDRKDSPWEELGPVSVSNSNESDLELEPSEKAIELKTAVNPNYEPDFSEDDYSELGGGDNSCLTQSEYDHVFPANHGTRDSGKETSILKTQETDLNDVVCRYSEDEFYDSSSEDDRKDPPWEESGPVSVSNPDESDLESKPGQEALELKTAIDPDYEPDLSDDDSSDSGGDHSCLTQSEGEGEPKLNGEDSSLQNLDSIYGSQEGEDSVNQKKANTEGIGPADGLNAPWISTPATSSGIHLGSYKEKHKHKKNSSFDDEPVSHQNKELIEGILRCLKRADDVKMPN 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00647 980 CDD LOTUS 590 645 - -
Accr8g00647 980 ProSiteProfiles OST-type HTH domain profile. 589 663 IPR025605 -
Accr8g00647 980 MobiDBLite consensus disorder prediction 767 957 - -
Accr8g00647 980 MobiDBLite consensus disorder prediction 882 909 - -
Accr8g00647 980 Pfam NYN domain 55 188 IPR021139 GO:0004540
Accr8g00647 980 MobiDBLite consensus disorder prediction 734 755 - -
Accr8g00647 980 PANTHER LIMKAIN B LKAP 41 580 IPR024768 GO:0005777|GO:0010468
Accr8g00647 980 MobiDBLite consensus disorder prediction 555 572 - -
Accr8g00647 980 MobiDBLite consensus disorder prediction 792 816 - -
Accr8g00647 980 Pfam OST-HTH/LOTUS domain 259 321 IPR025605 -
Accr8g00647 980 Pfam OST-HTH/LOTUS domain 590 649 IPR025605 -
Accr8g00647 980 MobiDBLite consensus disorder prediction 767 781 - -
Accr8g00647 980 MobiDBLite consensus disorder prediction 690 720 - -
Accr8g00647 980 MobiDBLite consensus disorder prediction 555 580 - -
Accr8g00647 980 Gene3D - 584 651 IPR041966 -
Accr8g00647 980 Gene3D - 48 196 - -
Accr8g00647 980 CDD PIN_limkain_b1_N_like 54 176 - -
Accr8g00647 980 ProSiteProfiles OST-type HTH domain profile. 257 329 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00647 Accr-Chr8 10176798 10180380 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00647 55 200 C2H2 Transcription Factor Family AT5G61190 42.857 3.69e-33 136