Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00631 ATGGCTGTTTCTGCTAATTCTCAAGTACTGATCTTCCATGACCTTATTGGCCAATATTACTCCAGAAGGTTACTATCCCTTCACTCCCCCCACAACTCAACTAACCCACCATCTTCTTCTAACAACCCCTCCACAGAATCTTTGTTCCTCGGAGACGGTAACTTCGATGCAAATGTTATCATGGTACTGTCTGTCCTCTTATGTGCTCTCTTTTGCTCATTGGGATTAAACTCCATCATCAGATGTGCCCTGAGGTGTTCCAACATCATCGTCCTCAGCAATAATAACGGCTCATCTTTAAACCTTCCTGCGGCGGCTCTGGTGGCCAACACCGGAGTGAAGAAGAAGGCCTTAAAGACTTTCCCTACAGTGACATACTCTTCTGAGTTGAACCTCCCAGGTTTAGACACAGAGTGCGTGATTTGTCTCTCCGAGTTTAAAAATGGCCATCGCCTTCGGATTCTTCCCAAATGTAACCATGGCTTCCATGTTCATTGTATTGACAAGTGGCTCCGCTCGCATTCTTCTTGCCCTAAGTGCAGGCACTGCCTTATTCAGACATGTCAGAAGATTGTAGGGTCAAGATCATCCACCACAACGACGTCGTCTCAACCTTCTTCTGTTCCTTCTGCTGAAACTATTGTGAGGATCGTCCCTTTAGAACCAGAGGGTATGGTACGTCACTATGCCTAG 693 0.4632 MAVSANSQVLIFHDLIGQYYSRRLLSLHSPHNSTNPPSSSNNPSTESLFLGDGNFDANVIMVLSVLLCALFCSLGLNSIIRCALRCSNIIVLSNNNGSSLNLPAAALVANTGVKKKALKTFPTVTYSSELNLPGLDTECVICLSEFKNGHRLRILPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIQTCQKIVGSRSSTTTTSSQPSSVPSAETIVRIVPLEPEGMVRHYA 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00631 230 CDD RING-H2_EL5-like 138 181 - -
Accr8g00631 230 PANTHER RING-H2 FINGER PROTEIN ATL78 15 225 IPR044602 GO:0016567|GO:0016740
Accr8g00631 230 FunFam RING-H2 finger protein ATL73 101 186 - -
Accr8g00631 230 Pfam Ring finger domain 138 181 IPR001841 -
Accr8g00631 230 SUPERFAMILY RING/U-box 117 186 - -
Accr8g00631 230 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Accr8g00631 230 SMART ring_2 139 180 IPR001841 -
Accr8g00631 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 185 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00631 Accr-Chr8 10012908 10013600 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00631 33 185 C3H Transcription Factor Family AT3G10910 45.161 4.31e-41 137