Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00629 ATGGTTGCTTCCACTAATTCTCAGTTAATTTTCTTCCATGATGACCTTCTTGGCCATCAATTCCATTACTCTAGAAGGTTACTATTCCTTAACTCCAACGTCAACTCACCCAAAAACTCCACAGAACCTTCCGTCCTCGGAGATGGTTATACCTTAGATGCAAACGTTATCATGGTACTCTCTGTCCTCATCTGTGCTCTCTTCTGCTCATTGGGTTTAAACTCCCTCATCAGATGTGGCCTAAGGTGTTCCAACATCATCGTCGACGGTAATAACAACGAATCATCAAACCCTTCGGCCGCAGCTCGAGTGGCCAACAAGGGAGTGAAGAAGAAGGCCTTGAAGACTTTCCCTATAGTGACATACTCTTCTGAGTTGAACCTCCCAGGTTTAGACTCAGATTGTGCGATTTGTCTCTCCGAGTTTAACAAAGGCGATCGGCTTCGGATGCTTCCGAAGTGCAACCATGGCTTCCATGTTCGTTGTATTGACAAGTGGCTGAGCTCGCATTCTTCTTGCCCTAAGTGCAGACACTGCCTTATTCAGACATGTCAGAAGATTGTGGGGTCATCAACGAGGTCCTCGTCCCAACCTTCTTCTACTGTTGCTCCGGCTGAAACTATTGTGAGGATTGCACCTTTAGAACCGGAGGGTATGGTGCGTAACTATAGCTAG 675 0.4652 MVASTNSQLIFFHDDLLGHQFHYSRRLLFLNSNVNSPKNSTEPSVLGDGYTLDANVIMVLSVLICALFCSLGLNSLIRCGLRCSNIIVDGNNNESSNPSAAARVANKGVKKKALKTFPIVTYSSELNLPGLDSDCAICLSEFNKGDRLRMLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIQTCQKIVGSSTRSSSQPSSTVAPAETIVRIAPLEPEGMVRNYS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00629 224 CDD RING-H2_EL5-like 134 177 - -
Accr8g00629 224 SUPERFAMILY RING/U-box 113 182 - -
Accr8g00629 224 PANTHER RING-H2 FINGER PROTEIN ATL78 20 219 IPR044602 GO:0016567|GO:0016740
Accr8g00629 224 Pfam Ring finger domain 134 177 IPR001841 -
Accr8g00629 224 SMART ring_2 135 176 IPR001841 -
Accr8g00629 224 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Accr8g00629 224 FunFam RING-H2 finger protein ATL73 95 182 - -
Accr8g00629 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 181 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00629 Accr-Chr8 9993224 9993898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00629 26 181 C3H Transcription Factor Family AT1G20823 44.375 1.15e-40 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00629 K19040 - gmx:100787934 272.322