Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00622 ATGGTGAGGGACGATCTATACATCACGATTCCGAGCTTCTTCCGGTGTCCTATTTCCCTCGATATCATGAAATCTCCGGTGAGTCTCTCCACCGGCGTTACCTACGACCGTTCCAGCATCCAACGCTGGCTCGACAACGGCAACAACACCTGCCCTGCAACCATGCAGATTTTGCAAACCAAAGAATTTGTTCCGAACCGTACTCTACAGAGGCTTATCCAGATCTGGTCCGACTCGGTTGCGAACCGAGTCGAATCGGCCGATTCTCCGGCCACCAGAACAGTCCCCTCCCCGGATCAGGTTGTCGACTCTATGAAATACTTGGATGGCCACGGCGAGAACTGCCTCGATTCCTTGTCAAGAATTTTATATTTCGCCGAAGAATCTGAAGAGAATCGGGAGTTCCTCGCGAAGTTAGACGGATTCGTGCCTTCACTCGTAGATTTACTCGACAATGTCAATGGCGCCGTGGAAATGCTCGAGAGAGTCGTTAATGCTTTGGATGCGGTTCTAGATAAAATCGAAGATCGAGAGCAGTTGAAGAAATCGATGTTGAAGAGCCACGATAATTGCCTAGCTTCTTTGCTCCTTGTTCTGCAACAAGGCGGCACCGGCTCGAAAATCGGATCGGCGAGGATCCTGAGGTTCATCGCGGTGGACCCCGAGGCCAAATACATGATTGCCGAAAAGGAAGGTCTAATGTCCGAATTGCTCAAATCAGTCGCTCCAGTTAAAGACCCAGCGCTAATCGAAAACGGCTTATCGTGTTTGATTGCAATCTCTACGCCGAAACGGAATAAGTTGAAATTGGTCCATATCGGAGCTATCAAGGCACTTTCGCAATTACTTTCCAGCTCAAACTCGAGCACTTCCGTTACGGAAATGGTGCTGAAACTTCTCGAAGCGGTGTCGTCAACCAAAGAAGGCAGGTCAGAGATTTCCGAGGACCCGGTGTGTTTACCAGCTGTACTGCAGAAAGTTATGAAGATATCGATGATCGCGACGGAGCATGCGGTGATGATACTGTGGACTTTGTGTTATCTGTTTCGCGATCAGAAGGCGCAGGAAGTGGTGGCAATGGCCAACGGTTTCACCAAATTTCTGATTCTGATGCAGAGCAATTGTTCGCCGACGGTTCGTCAAATGTCGGCCGATTTGCTCAAGATTTTTCGAGTCAACTCGAAATCATGTCTTTCTTGTTATGATACTAAGACCACCCATATCATGCCCTTCTGA 1236 0.4887 MVRDDLYITIPSFFRCPISLDIMKSPVSLSTGVTYDRSSIQRWLDNGNNTCPATMQILQTKEFVPNRTLQRLIQIWSDSVANRVESADSPATRTVPSPDQVVDSMKYLDGHGENCLDSLSRILYFAEESEENREFLAKLDGFVPSLVDLLDNVNGAVEMLERVVNALDAVLDKIEDREQLKKSMLKSHDNCLASLLLVLQQGGTGSKIGSARILRFIAVDPEAKYMIAEKEGLMSELLKSVAPVKDPALIENGLSCLIAISTPKRNKLKLVHIGAIKALSQLLSSSNSSTSVTEMVLKLLEAVSSTKEGRSEISEDPVCLPAVLQKVMKISMIATEHAVMILWTLCYLFRDQKAQEVVAMANGFTKFLILMQSNCSPTVRQMSADLLKIFRVNSKSCLSCYDTKTTHIMPF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00622 411 PANTHER WDSAM1 PROTEIN 9 399 IPR045185 GO:0061630
Accr8g00622 411 SUPERFAMILY RING/U-box 5 78 - -
Accr8g00622 411 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Accr8g00622 411 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Accr8g00622 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 95 IPR013083 -
Accr8g00622 411 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Accr8g00622 411 SUPERFAMILY ARM repeat 109 393 IPR016024 -
Accr8g00622 411 CDD RING-Ubox_PUB 11 63 IPR045210 -
Accr8g00622 411 Coils Coil 157 177 - -
Accr8g00622 411 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 274 318 IPR000225 GO:0005515
Accr8g00622 411 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Accr8g00622 411 Gene3D - 113 394 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00622 Accr-Chr8 9902761 9903996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00622 1 411 U-box Gene Family AT5G09800 54.327 5.18e-145 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00622 - - qsa:O6P43_023349 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00622 8 9902761 9903996 Accr8g00622 8 9902761 9903996 ECH