Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00615 ATGGACCCATCGGGGAATTCCTCCGGCGGCGAAACACCACCGTCGTCTCCGAACCAAACTCAACTCCACTGGCCTGGGCAAACTCATGTTACGGCCAACAATGAACCGCACATTATCAACGAACCATCTCTGCCATTGCCTAACGCCGGCGGAAGAAGAGCACCACCGTCGCCGCCCCGGCCTCTTGAAATCGAAGAGCCTCGCCAACCTCCTCTTGGAGCCAACCAAGAATCTCACATTATCAACAAACAAATTCCACCACCGCATCATGCTGCCAACGGAAGCGGAACACAACCGTCGCCTTCTTCCCAGATACGACATGAAAACTTAGAGCAGAGCTTAAAAGATACAATTCTTCAATTGCAACAACAGATTCTAAGACTCGACCACGACTTCTTCGGCGCAAAAACATATTCGGAGGCCTTCGAAATTAAACTTCTTCGGAATGAGTTAGAAGATAAATATCTTCAATTTCAACGTGATCCAAGAGTCCACCAAGAATCCAAACCGTCGTCGTCGTCCGAAGACCGGCGTGGTGGCGTTGTTGCTCGTTCCTGTGCCAATTGCAACAACACTTCAACAACCCAGTGGAGAAGTGACCCCACAGGTCAAAAGTCTCTGTGCAATGCCTGTGGGATCAGACTCAACAACAGGGAGGAAGAGACAAGAGCCGCATCAGGATTACAGTCATCCAACGTAGTGTCGCCGCCACCCGAAATGTCACCAACGGCGGCACCAAGTCTTGCAAACAGGGTTCAGCTCGTGGAAAATATCTCCGGATTACAGTCATCACCACCATTGCGGGACCCACCAGAAGAAGCGTCCGAGACGGAGGAGTTGTGGCAAAGCTGGATAAATAAAAGTCCAGACAACAGCCCTGTTTGCAAGAGGGCAAAGATGGAGGAGCCACCGGCGGTACCATTGCCGGACCCATCAGAAGTAGCGTCAAATATGGAGGAGTTCAGCCAAAGCCTGACAGATAGAACTCCAGACAACAACCCATTTGTGCCGGAAAATAACTTCTTGCGACACTCTTCGGGATTACAGTCATCCAACGTAGTGTCGCCGCCACCGGAAATGTCACCACCGGCGGCACCAAGTCTTTCAAACAGGGTTCAGCACTTGGAAAATATCTCGGGATTGCAGTCATCACCACCATTGCGGGACACACCAGAAGAAGCGTCAGAGACGGAGGAGTTCTGGCAAAGCTGGATAAATAAAAGTCCAGACAACAGCCCTGGAGCATAG 1248 0.5104 MDPSGNSSGGETPPSSPNQTQLHWPGQTHVTANNEPHIINEPSLPLPNAGGRRAPPSPPRPLEIEEPRQPPLGANQESHIINKQIPPPHHAANGSGTQPSPSSQIRHENLEQSLKDTILQLQQQILRLDHDFFGAKTYSEAFEIKLLRNELEDKYLQFQRDPRVHQESKPSSSSEDRRGGVVARSCANCNNTSTTQWRSDPTGQKSLCNACGIRLNNREEETRAASGLQSSNVVSPPPEMSPTAAPSLANRVQLVENISGLQSSPPLRDPPEEASETEELWQSWINKSPDNSPVCKRAKMEEPPAVPLPDPSEVASNMEEFSQSLTDRTPDNNPFVPENNFLRHSSGLQSSNVVSPPPEMSPPAAPSLSNRVQHLENISGLQSSPPLRDTPEEASETEEFWQSWINKSPDNSPGA 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00615 415 CDD ZnF_GATA 185 214 IPR000679 GO:0006355|GO:0043565
Accr8g00615 415 SMART GATA_3 180 232 IPR000679 GO:0006355|GO:0043565
Accr8g00615 415 MobiDBLite consensus disorder prediction 222 238 - -
Accr8g00615 415 Pfam GATA zinc finger 186 217 IPR000679 GO:0006355|GO:0043565
Accr8g00615 415 MobiDBLite consensus disorder prediction 316 355 - -
Accr8g00615 415 Gene3D - 182 240 IPR013088 GO:0006355|GO:0008270
Accr8g00615 415 PANTHER GATA TRANSCRIPTION FACTOR 18 141 231 IPR044272 GO:0003700|GO:0009908
Accr8g00615 415 ProSitePatterns GATA-type zinc finger domain. 186 211 IPR000679 GO:0006355|GO:0043565
Accr8g00615 415 MobiDBLite consensus disorder prediction 1 105 - -
Accr8g00615 415 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 183 218 - -
Accr8g00615 415 ProSiteProfiles GATA-type zinc finger domain profile. 183 213 IPR000679 GO:0006355|GO:0043565
Accr8g00615 415 MobiDBLite consensus disorder prediction 160 174 - -
Accr8g00615 415 MobiDBLite consensus disorder prediction 160 181 - -
Accr8g00615 415 MobiDBLite consensus disorder prediction 366 390 - -
Accr8g00615 415 MobiDBLite consensus disorder prediction 1 38 - -
Accr8g00615 415 MobiDBLite consensus disorder prediction 91 105 - -
Accr8g00615 415 MobiDBLite consensus disorder prediction 222 245 - -
Accr8g00615 415 MobiDBLite consensus disorder prediction 397 415 - -
Accr8g00615 415 MobiDBLite consensus disorder prediction 260 415 - -
Accr8g00615 415 MobiDBLite consensus disorder prediction 49 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00615 Accr-Chr8 9749606 9750949 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00615 181 238 C2C2-Gata Transcription Factor Family AT3G50870 53.448 2.72e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Accr8g00615 GATA 1.4e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00615 - - nto:104098293 72.7886