Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00613 ATGGCTCCGGCCAACTCCTCGGCGGCGGCTCAGAGGGTCATCGGCTTCATCCGCCGTACACAAGCTCCGCGTCAGTCGCCGCCGCCGGCCTGCCCTCCTGTCAAGAAGTATAAGTCATTGACCGAGATAATGGCCAAGGCACGATATGCTGTTGTGGAGAGGGATGATTACAGCGATGTGTTGTGTGACCAATGTGGCTCAGGTGAACGCCCGGATGAGCTGCTTCTGTGTGACAAATGCGATAAAGGCTTCCATATGAAATGCGTGAGGCCTATTGTTGTTAGAGTGCCTATTGGATCATGGCTTTGCCCTAAGTGTTCGGGGGAGAAGAGAGTAAGAAGTTTCTCTCAGAAGAAGATAATTGATTTTTTCCAGATTCAGAAATGTGCTGATCTTAAAAACAAATGTTCTTCTACCCAAGATGCCAAGAAGCGTAAAAGGCGCACATCACTGATATTGCACAAGAAACGAAGAAGATTATTGCCGTTTATTCCTGCAGACAATCCTTCCCGGAGACTGAAACAGATGGGTTCTCTTGCTTCTGCTTTAACAGCATTGCATATGGAATTCAGTGATGATCTCACATACTCACCCGAAATGGCTCCTAGGTCTGCTAATCATGCCGATTTTGAAAATGGTGGCATGCAGGTTCTTTCCAGGGAAGATATTGAGACCTTGGAACACTGCAGAGCCATGGGTAGAAGAGGCGAATGCTCTCCCCTTATGGTTGTTTATGATTCATGTGAAGGGTATACGGTTGAGGCCGATGGCCCGATCAAGGATATGACATTCATTGCTGAATACACAGGTGATGTGGATTACATTAAGAACCGAGAAAATGATGATTGTGACAGTCTGATGACCCTTCTGCTAGCAACTGATCCTGCTAAAAGTCTTGTAATCTGCCCTGATAAACGTGGAAACATTGCTCGTTTTATAAATGGCATCAACAATCATACACAGGAAGGTAGAAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAATGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGTGATATTTCAAAAGGCGAGAGGCTTTATTATGATTATAACGGTTATGAGCATGAATACCCTACTCATCATTTTGTCTGA 1122 0.4501 MAPANSSAAAQRVIGFIRRTQAPRQSPPPACPPVKKYKSLTEIMAKARYAVVERDDYSDVLCDQCGSGERPDELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPKCSGEKRVRSFSQKKIIDFFQIQKCADLKNKCSSTQDAKKRKRRTSLILHKKRRRLLPFIPADNPSRRLKQMGSLASALTALHMEFSDDLTYSPEMAPRSANHADFENGGMQVLSREDIETLEHCRAMGRRGECSPLMVVYDSCEGYTVEADGPIKDMTFIAEYTGDVDYIKNRENDDCDSLMTLLLATDPAKSLVICPDKRGNIARFINGINNHTQEGRKKQNCKCVRYNVNGECRVFLVATRDISKGERLYYDYNGYEHEYPTHHFV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00613 373 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Accr8g00613 373 SMART PHD_3 61 107 IPR001965 -
Accr8g00613 373 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 129 371 - -
Accr8g00613 373 FunFam Histone-lysine N-methyltransferase ATXR5 145 373 - -
Accr8g00613 373 Gene3D SET domain 145 373 IPR046341 -
Accr8g00613 373 Pfam PHD-finger 62 107 IPR019787 -
Accr8g00613 373 ProSitePatterns Zinc finger PHD-type signature. 62 106 IPR019786 -
Accr8g00613 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 122 IPR013083 -
Accr8g00613 373 CDD SET_ATXR5_6-like 236 373 - -
Accr8g00613 373 Pfam SET domain 266 361 IPR001214 GO:0005515
Accr8g00613 373 SUPERFAMILY FYVE/PHD zinc finger 26 107 IPR011011 -
Accr8g00613 373 SUPERFAMILY SET domain 235 361 IPR046341 -
Accr8g00613 373 ProSiteProfiles SET domain profile. 240 361 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00613 Accr-Chr8 9732344 9736123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00613 59 115 C2H2 Transcription Factor Family AT3G01460 36.207 8.69e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr8g00613 SET 2.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00613 K24406 - qsa:O6P43_023354 626.32