Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00560 ATGAACGAAGAGAGTCCCTGCAACAACAAAGCCAGTCCTGAAAGGCCTTGCTTAAAATCAGCAGCAGCAGCAACAGCAACAACAAACAAAGAACAAGATCGATTCCTTCCGATCGCGAATGTCGGGAGGATCATGAAGAAAGTGATCCCTCCAAATGGGAAAATCTCAAAGGAGGCCAAAGAAACTGTCCAAGAATGTGTTTCTGAGTTCATCAGTTTCATCACCAGCGAGGCCTCTGATAAGTGCCAGAAAGAAAAGAGGAAAACCATTAATGGCGATGACATTATCTGGGCCATCTCAACTCTTGGCTTTGAGAACTACGTTGATCCTTTGAAATGTTACCTTCAGAAATATAGAGAGATAGAAGGAGAAAAGCTTAATGTTCCCAAACAACAACGTTCTCAACATGATCATCATCAAAGCAGGCTACAACACAATAATATTGCTAATATTAATAATATACCTTTAAATACTCGTGTATATTCTTCAACCAATCTCATTTCTCATCAGCCTCCTCCTCCTTATGTGACCTCGGATCAGACATTTTCCGTACCTTTCTCATCAACTTCTATTCAGAAACCGTCACAGCCCCAGGACAATATGGATACAGTGGGGCGTTGGTAA 624 0.4151 MNEESPCNNKASPERPCLKSAAAATATTNKEQDRFLPIANVGRIMKKVIPPNGKISKEAKETVQECVSEFISFITSEASDKCQKEKRKTINGDDIIWAISTLGFENYVDPLKCYLQKYREIEGEKLNVPKQQRSQHDHHQSRLQHNNIANINNIPLNTRVYSSTNLISHQPPPPYVTSDQTFSVPFSSTSIQKPSQPQDNMDTVGRW 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00560 207 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 24 146 IPR027113 GO:0001228|GO:0006355|GO:0016602
Accr8g00560 207 Gene3D Histone, subunit A 22 153 IPR009072 GO:0046982
Accr8g00560 207 FunFam Nuclear transcription factor Y subunit B-3 24 149 - -
Accr8g00560 207 ProSitePatterns NF-YB/HAP3 subunit signature. 66 82 IPR003956 GO:0005634|GO:0006355|GO:0043565
Accr8g00560 207 MobiDBLite consensus disorder prediction 169 207 - -
Accr8g00560 207 SUPERFAMILY Histone-fold 32 136 IPR009072 GO:0046982
Accr8g00560 207 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 35 99 IPR003958 -
Accr8g00560 207 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
Accr8g00560 207 PRINTS CCAAT-binding transcription factor subunit A signature 63 81 - -
Accr8g00560 207 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Accr8g00560 207 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00560 Accr-Chr8 8768023 8768646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00560 1 207 CCAAT-HAP3 Transcription Factor Family AT2G13570 55.357 2.52e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Accr8g00560 CBFD_NFYB_HMF 1.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00560 K08065 - tcc:18611900 254.218