Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00554 ATGAGCGAAGAAGAACCCCATCGACTCACTTCTTCCCTGAAGCAGCGGCGAGTCTTATCTTTATCTTTTTCACTCACCGGCGACCCACAACGAAGAGGTTCGATCTATACACCCAACCCCAGATCCGACAAGTTAATGTCCGGAATCTTATCCGAAGAGTCGACGGAGTGTTCCTCCGACCTCGATTCCTCTCCGTCGTCAAGAGAGACACAGTGCCTTACCGGCCTGAATCCTTGCGCAGAACCAATATCGCGACGAGACGCAGACCAGAACACTCGAGGCGACGACACACAGTGCGAAGACATCGGCCTGAATCGTTGCACAGAATCCAGATCGCGATCTGGTTCCAGTTATTTTCAGTCAAAAGAAGACATGGGCGCTATTAAGAAATCCAATTTGAAGCCAAGATCTTCATCCACTCTTCTAAAGGTACAGAGCGGCAGAGTACAAAAGAAGGTTACAAGTAAGAATGTAGAAAGAACTTTGAGGCTAAAGAGATCAACCATTGATTATGAGTCTCATGCTATAGAGCGAGCGAAAGAGGTTCAGGCAAATCTATCCCATGAATTTCCGAGCCTTATCAAGTACATGCTCCCATCACATGTTTCTGGTGGATTTCGGCTGGGTTTTCCTAAACATTTCTGTGAAATGCATTTGCCCAAGGTTGATTCTATGCTTATTTTGGAAGATGAGAATGGAAGACAATATGGAACAAAATATCGTATTAGGAAGGCGGGCTTAAGTGGTGGATGGAGAGGCTTTTCCATTGCTCACAATTTACTTGAGGGGGATGTTTTAGTTTTCCATTTAATCCAGTCTCGCATGTTCAAGGTGTTCATCATAAGATCTCATGGATCAAATGAAATGGATGTTGCGCTTGGCCTTCTATATTTAGATGGTTGCATGAAGCAACATGAGAAATGTTCCTGA 930 0.4473 MSEEEPHRLTSSLKQRRVLSLSFSLTGDPQRRGSIYTPNPRSDKLMSGILSEESTECSSDLDSSPSSRETQCLTGLNPCAEPISRRDADQNTRGDDTQCEDIGLNRCTESRSRSGSSYFQSKEDMGAIKKSNLKPRSSSTLLKVQSGRVQKKVTSKNVERTLRLKRSTIDYESHAIERAKEVQANLSHEFPSLIKYMLPSHVSGGFRLGFPKHFCEMHLPKVDSMLILEDENGRQYGTKYRIRKAGLSGGWRGFSIAHNLLEGDVLVFHLIQSRMFKVFIIRSHGSNEMDVALGLLYLDGCMKQHEKCS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00554 309 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 128 284 IPR044837 -
Accr8g00554 309 Pfam B3 DNA binding domain 194 279 IPR003340 GO:0003677
Accr8g00554 309 SMART B3_2 193 285 IPR003340 GO:0003677
Accr8g00554 309 SUPERFAMILY DNA-binding pseudobarrel domain 186 284 IPR015300 -
Accr8g00554 309 MobiDBLite consensus disorder prediction 81 100 - -
Accr8g00554 309 MobiDBLite consensus disorder prediction 51 75 - -
Accr8g00554 309 MobiDBLite consensus disorder prediction 26 45 - -
Accr8g00554 309 MobiDBLite consensus disorder prediction 86 100 - -
Accr8g00554 309 ProSiteProfiles B3 DNA-binding domain profile. 193 284 IPR003340 GO:0003677
Accr8g00554 309 Gene3D - 168 284 IPR015300 -
Accr8g00554 309 CDD B3_DNA 191 282 IPR003340 GO:0003677
Accr8g00554 309 MobiDBLite consensus disorder prediction 26 41 - -
Accr8g00554 309 MobiDBLite consensus disorder prediction 51 74 - -
Accr8g00554 309 MobiDBLite consensus disorder prediction 108 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00554 Accr-Chr8 8653575 8656710 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00554 170 282 B3 DNA Binding Superfamily AT3G19184 50.442 2.84e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr8g00554 B3 2.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00554 - - qsa:O6P43_011706 189.119