Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00552 ATGGAAAATGAGTTACTCAAGAAATCACAAGCTCTTCTGAGCCTGAGAAAAAGGAAACGAATTGGTTCAACAATGGCAAAGAGCCATTTTCGGTCAAAAGAAGACATGGGTGCTATTAAGAAATCCAATCTGAAGCCAAGATCTTCATCCACTCTTCTAAAGGTTACAAGTAAGAATGTAGAAAGAGCTTTGAGGCTAAAGAGATCAACCATTGATTATGAGTCTCATGCTTTTGAGCGAGCGAAAGAGGTTCAAGCAAATCTATCCCATGAATTTCCAAGCTTTATCAAGTACATGCTCCCATCACATGTTTCTGGTGGATTTTGGCTGGGTTTTCCTAAACGTTTCTGTGAAATGCATTTGCCCAAGGTTGATACTATGCTTGTTTTGGAAGATGAGAATGGAAGAGAATATGAAACAAAATATCTTACCGAGAAGGTGGGCTTAAGTGGTGGATGGAGAGGCTTTTCCATTGCTCACAATTTACTTGAGGGACATGTTTTAGTTTTCCATTTAATCCAGTCTCGCAAGTTCAAGGTGTTTATCATAAGATCTCATGGGTCAAACGAAGTGGATGTTGCTCTCGGCCTTCTATATTTAGATGGTTGCATGAAGCAACATGATTCTAATATTGCTGAAGAAAACGATCCAAGCAATGGCACAATGATGTGTGATGCTGACGTATCGCCATCAGATCAACATGAAAATACTAGTGATCTAGATGAACATCTTGGCTATGAAGTTTTGTATGGGATTAAATTATCAGAATCTTCAATCACTTTCGAAGAAGTCACTAGTATTGAGAAATTCAGCATTGTGGTTAATGGTCTGGAACTTGACTCAGAACTATCCAAACACCTCAAGACCAAGTACTATGAGCTTTGTTGTAGTCAAGGAATGTTTCTTCATGAGCACGTCCTTGAAGGTCAGAACTGTAAACTTGTGGTTGGAATGATATGTGAGACCATTAATATTGCTGATGCCATTAGAGCCAGCAAGATCACAACCTCCTTGGATAGTTTTGAAGTGTGGTATAAATCTTTAAAAGGTCTTGAAATCTTCGGCATGAATGTTAGTTTCTTGCTTTCTAGGCTAGAACAACTCATGAGTTTAGCTTCAAAATCCAAGAGGTACACGGAGACAAGAATTACACGAGATAAAGCTAAAGAGGAAAAGGAAGTTCTTGAACAGAAGCTTGAGGAAGTGAAAGAGACCATTAGTAGACTTGATGTCGAGCTTGACACCCAAAATTTGAACCCTGAGAGGTTGGAGGCTGAGTTTGAAGATCTGGCTAATACTCCTTGGTGA 1308 0.3922 MENELLKKSQALLSLRKRKRIGSTMAKSHFRSKEDMGAIKKSNLKPRSSSTLLKVTSKNVERALRLKRSTIDYESHAFERAKEVQANLSHEFPSFIKYMLPSHVSGGFWLGFPKRFCEMHLPKVDTMLVLEDENGREYETKYLTEKVGLSGGWRGFSIAHNLLEGHVLVFHLIQSRKFKVFIIRSHGSNEVDVALGLLYLDGCMKQHDSNIAEENDPSNGTMMCDADVSPSDQHENTSDLDEHLGYEVLYGIKLSESSITFEEVTSIEKFSIVVNGLELDSELSKHLKTKYYELCCSQGMFLHEHVLEGQNCKLVVGMICETINIADAIRASKITTSLDSFEVWYKSLKGLEIFGMNVSFLLSRLEQLMSLASKSKRYTETRITRDKAKEEKEVLEQKLEEVKETISRLDVELDTQNLNPERLEAEFEDLANTPW 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00552 435 MobiDBLite consensus disorder prediction 24 47 - -
Accr8g00552 435 CDD B3_DNA 93 184 IPR003340 GO:0003677
Accr8g00552 435 Pfam B3 DNA binding domain 95 182 IPR003340 GO:0003677
Accr8g00552 435 MobiDBLite consensus disorder prediction 27 41 - -
Accr8g00552 435 SUPERFAMILY DNA-binding pseudobarrel domain 88 186 IPR015300 -
Accr8g00552 435 Coils Coil 378 419 - -
Accr8g00552 435 SMART B3_2 95 187 IPR003340 GO:0003677
Accr8g00552 435 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 66 187 IPR044837 -
Accr8g00552 435 Gene3D - 70 186 IPR015300 -
Accr8g00552 435 ProSiteProfiles B3 DNA-binding domain profile. 95 186 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00552 Accr-Chr8 8627131 8631221 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00552 69 184 B3 DNA Binding Superfamily AT3G19184 52.586 2.07e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr8g00552 B3 3.8e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00552 - - pcin:129286163 478.018