Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00547 ATGAGGTTTAAGGAAAAGTTTGGGAGTCACATAAGTTATGGACGTGACAAAGGAGCTACAAAGGAAAACAAGCGGTTGAGTTCCTCTGCGGCAAAGGAGCTCAGAGATCGTGTTCAACCTTACTTTTTACGTCGTACGAAGAGTGAGGTTGTTGGGGCTAAAATTTCCAACAAACATGAGATTGTTGTGTGGCTACGACTGACCAATATTCAGCAACATCTTTACAAAGAATTTCTGAGTACGGTTAACTATAAAACATGGGATTATGGAGAACCATTTGCTGCACTTAAGATTATGAGGAAAATATGTGATCATCCTCTCCTGTTGAGAAAACGAGACCTGTCAAAAGGAATATACAGGAAGCTGCTACATATAGAAGAGGCTAATCTTGTAGATAAGTTGGAATTGCGCATGAAAGATGTTAGGAACACATACAATTTCAAAGTTGAGCATGAAATCTCGTGCAAATTATCATTCATAATGTCACTATTGGGTAATTTGATTCCACAGGGGCATCATGTACTTATTTTTTCTGGAAGTCTCAAGATGCTTGATCTTATTCAGGAATCCCTATTGTCCAAAGGTTATAAATTCTCACGAATTGATGGAACAACAAAAGCCGAGGACAGAACAAAGATTGTTGATGATTTCCAACAACATGCTGTAGCTCCCATTTTTCTTTTGTCATCAAAAGTTGGCGGTTTGGGGTTGACATTAACTAGAGCAGATCGTGTGATTGTGACTGACCCTGATTGGAACCCAAGTACGGATGACCAGATTGTTGATCGTGCATGTCGTGTTGGTCAAGCGAAAGAAGTTGTTGCATATAGACTAATTACATGTGGAACACTTGAAGACAAAGCATACAGGAAGCAAGTATTCAAGGACGGATTGTGTAAGACGGGGACTGAGCATAAAGAAAAAGCTCGTCACTTCAGCTGGAATGATCACAGATATCCTTTCACTCCCCCCAAAAAAGGCTTTGATGTATCTGTCACCCAACAGCAATTAGAGAAGAAGTATGATTGGGAAGAGACAATGGATGAGTCTTTTAAAGAACATATAGATTTCTTGAGAAGTCTAGGCATAGCTGGAGTTACTCACCACAATGAACTTCTCTCCATAGAAGCATCAGATGATGAAGATGACCCTGAGAATTATGAAGCAACAAGAACTGAGTCTGCTCTTTATTCAAAGAGAGCCAAATTGAGAAGTAAGAGTTCTTCCCCAAATAGTTTGGGTCAATTATCTGAACCATTCGCCCGGAAGGCAAATCGTGATATGATGGACACGTGGTCTAGAAAATTGGAGTGCAATGATGTCCGATTTGCACAAGAATCCAATGAATGGAAACACAAGCATCAAAGGCAAAAGACTACTGTTCAAGCTAAGTAG 1395 0.3993 MRFKEKFGSHISYGRDKGATKENKRLSSSAAKELRDRVQPYFLRRTKSEVVGAKISNKHEIVVWLRLTNIQQHLYKEFLSTVNYKTWDYGEPFAALKIMRKICDHPLLLRKRDLSKGIYRKLLHIEEANLVDKLELRMKDVRNTYNFKVEHEISCKLSFIMSLLGNLIPQGHHVLIFSGSLKMLDLIQESLLSKGYKFSRIDGTTKAEDRTKIVDDFQQHAVAPIFLLSSKVGGLGLTLTRADRVIVTDPDWNPSTDDQIVDRACRVGQAKEVVAYRLITCGTLEDKAYRKQVFKDGLCKTGTEHKEKARHFSWNDHRYPFTPPKKGFDVSVTQQQLEKKYDWEETMDESFKEHIDFLRSLGIAGVTHHNELLSIEASDDEDDPENYEATRTESALYSKRAKLRSKSSSPNSLGQLSEPFARKANRDMMDTWSRKLECNDVRFAQESNEWKHKHQRQKTTVQAK 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00547 464 SMART helicmild6 185 268 IPR001650 -
Accr8g00547 464 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 159 313 IPR001650 -
Accr8g00547 464 Pfam Helicase conserved C-terminal domain 156 268 IPR001650 -
Accr8g00547 464 CDD SF2_C_SNF 148 279 - -
Accr8g00547 464 MobiDBLite consensus disorder prediction 398 422 - -
Accr8g00547 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 311 IPR027417 -
Accr8g00547 464 Gene3D - 57 355 IPR027417 -
Accr8g00547 464 Pfam SNF2-related domain 25 107 IPR000330 GO:0005524|GO:0140658
Accr8g00547 464 MobiDBLite consensus disorder prediction 445 464 - -
Accr8g00547 464 PANTHER SNF2/RAD54 FAMILY MEMBER 2 455 - -
Accr8g00547 464 MobiDBLite consensus disorder prediction 401 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00547 Accr-Chr8 8557107 8564130 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00547 101 295 RAD5 or RAD16-like Gene Family AT5G22750 31.980 3.39e-22 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr8g00547 Helicase_C 2.1e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00547 K20093 - gmx:100779283 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00547 8 8557107 8564130 Accr8g00547 8 8557107 8564130 ECH