Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00546 ATGGCTGGCAAAAGTGGCAAGAAACCAGTAAGCCTCAACGATAGCCATTATCGGTTCCTCCAAGACCTTTCCGCTCCTCCGAAACCCTACTCAGAGCTATCTGATGATGAGAACGAATCGTCCCCGACAATACTCAAAGGCTCAAGGCAGCAGCAGGGAAAAGCTTTATTCAGGGACGAGGAAGATGCTAGCATCCCTCGATTTTCTGCGATTACCGACTTTGATTCTCCTATTGAGCTATGCTCTGTGGAAGACAAACAGCCCGTCAAGGTAGATGATGGTCGACATCGTCTCTGTACAGTCTCGACGAAGGAAAATAACAATATTCCCCAGACCAAAGAAGCTTCCGACTCTGATACCCACAAAGTGGAAAAGAAGACTAAGGTCAAAATGGAAGGCCGGCGTCGCCTATGCAAGGTTTCATACGCAGAGAATGATAATACTGATAAAATGGTGGCGCTAGATGACTCGGAGGTTTCTGACCTTGTGGATCTTGATTCACCCCCTTTGCCGACGAAAAAGGCGACTGGGATTGAGAAGAGTCAGGGTAGGAGTGAAATTAGGGACATATTAGATGAGTTGAGCTCGAAGTTTGATGTTATGTCAATTGAGAAGAAGCGGGTAGTGAAATCAGCACATACACTTGAAAATTGTTCAGCATTTGTTGTAGGAAATGAAACTACGGCAGATAAGAATAATGATTATGCCAGTGCAGATTCTTCATTTTCAGCTCAACATGACCCATGCGACAGTTCATCTGATGCATCTAAGGGTGCTACTGGAGGCATTGAACATGTAGAAGATGATTCGGGCGATTCTGTCGAAGTGCTCGATCATTTTGACTCGAATGATAATTCTATAACTTTGAATGGCCCACATTCCACATACAAGTTGCCAGGCAAAATTGCCAAAATGTTGTATCCACATCAGCGTGATGGTTTGAAGTGGCTCTGGTGTCTGCATTGTCAGGGTAAGGGTGGAATCCTGGGGGATGACATGGGTCTAGGGAAAACTATGCAGATTTGTAGTTTTTTAGCTGGTTTATTCAATTCACGTTTGATTAAAAGGGCATTGGTGGTGGCACCAAAAACCCTACTTCCACATTGGATCAAAGAATTATCTGTTGTTGGTCTTTCTGAGAAGACAAGGGAATACTTTGGAACTTGTACTAAACTCCGAGATTATGAACTTCAATACATACTCCAGGATAAAGGTGTGCTTCTTACAACATATGATATTGTTCGCAATAATTCTAAATCATTACGGGGGAATTATGTATCTGATGATGAGGAAAGTGAAGACGGCCCCATATGGGATTATATGATCCTTGATGAGGGCCATCTTATAAAGAATCCAAGCACACAAAGAGCTAAAAGTTTGCTAGAGATACCAAGTGCCCATCGGATAATCATCAGTGGCACACCATTGCAAAATAATCTAAAGGAGTTGTGGGCCTTGTTCAATTTCTGCTGCCCTGAGTTGCTGGGTGATAAGAAATGGTTTAAAGAAAATTATGAGTCAGCTATACTTCGCGGAAATGACAAAAAAGCTTCTGAGAGAGACAAGCGTGTTGGTTCTTCTGTTGCGAAGATGCTTAGAGATCGCATTCAGCCTTACTTTTTAAGACGCCTAAAGAGTGAGGTTTTTAGTCAAGATGACAAGAATTCAACATTGAAACTCTCTCAGAAACAGGAGATTATCGTGTGGCTAAGATTGACTAGTATTCAGAGATATCTTTATGAAGCGTTTCTAAAGAGTGAGATTGTTCTTTCAGCATTTGATGGCTCACCGCTTGCTGCACTTACGATTTTGAAGAAAATCTGTGATCATCCGCTTTTGTTGACTAAGCGGGCAGCTGAGGATGTGTTGGAAGGGTTGGACTCAATGTTAAAGCCAGAAGAGGTTAACGTTGCGGAGAAATTGGCAATGCACATAGCTGACGTTGCTGACGCGGACAAGTTCAAGGCTGAGCATGATGTATCGTGCAAAATGTCTTTCATAATGTCATTATTGGATAACTTGATCCCACAAGGACATCATGTGCTTATTTTTTCTCAAACTCGCAAGATGCTTAATCTTATTCAGGAATCTATAACGTTCAAAGGTTATGAATTTGTACGAATTGATGGAACAACAAAAGCTAGTGATAGAATAAAGATTGTTAATGATTTCCAAGATGGTTCTACAGCTCCCATATTCCTTCTGACATCTCAAGTTGGCGGTTTGGGGTTGACACTTACTAAGGCAGATCGTGTGATTGTAGTTGATCCTGCTTGGAACCCAAGTACGGATAACCAAAGTGTTGACCGTGCATATCGTATTGGCCAAAATAAAGATGTTCTTGTATATAGACTAATGACAAGCGGAACTGTTGAAGAAAAGATATACAGGAAGCAGGTATACAAGGGGGGGTTGTTTAAAACAGCAACCGAGCATAAAGAACAAATTCGGTACTTCAGCCAGCAGGATCTCAGAGAGCTTTTCAGCCTCCCCAAGGAAGGTTTTGATGTGTCTGTTACTCAGAAGCAATTAGAGGAGGAGCATGCTTGCGAAGATACAGTGGATGACTCTTTTAAAGCCCACATAGAGTTCTTGAAAAGCCAAGGTATAGCTGGTGTTAGTCACCACAGTTTACTCTTCTCCAAAACAGCACCAGTTCAAGATGCACCTGAGGATGAAGTGTCAAGGAATCATGGGAACAGATATTTTGGAACTTCAGCATCTACTTCCCTTGAACGTCCTGTTGATGCAGCTGAGTTTGCTTTTAACCCAAAGGAAGTCAAAGTGAGCAAAAAAGGTTCTTCCCCAAATAGTGCTGGTAAATGGACTGAGTCTGAAATCAAGGATAAAATCAAACGGATTTCTCAAACACTGGCAAATAAGGCGATGATTTCTAGATTACCTGATGGGGGAGAAAAACTACAGCAGCGGCTTGCTCAACTAAATTCGGAACTCAGCAAATTGAAGATGGAAGAAAGAAATGTGGTTGATTTGGATGAAATAAGTGGCAAATTTCAAAAGGTATTAAATGTGTAA 3036 0.418 MAGKSGKKPVSLNDSHYRFLQDLSAPPKPYSELSDDENESSPTILKGSRQQQGKALFRDEEDASIPRFSAITDFDSPIELCSVEDKQPVKVDDGRHRLCTVSTKENNNIPQTKEASDSDTHKVEKKTKVKMEGRRRLCKVSYAENDNTDKMVALDDSEVSDLVDLDSPPLPTKKATGIEKSQGRSEIRDILDELSSKFDVMSIEKKRVVKSAHTLENCSAFVVGNETTADKNNDYASADSSFSAQHDPCDSSSDASKGATGGIEHVEDDSGDSVEVLDHFDSNDNSITLNGPHSTYKLPGKIAKMLYPHQRDGLKWLWCLHCQGKGGILGDDMGLGKTMQICSFLAGLFNSRLIKRALVVAPKTLLPHWIKELSVVGLSEKTREYFGTCTKLRDYELQYILQDKGVLLTTYDIVRNNSKSLRGNYVSDDEESEDGPIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDKKWFKENYESAILRGNDKKASERDKRVGSSVAKMLRDRIQPYFLRRLKSEVFSQDDKNSTLKLSQKQEIIVWLRLTSIQRYLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGLDSMLKPEEVNVAEKLAMHIADVADADKFKAEHDVSCKMSFIMSLLDNLIPQGHHVLIFSQTRKMLNLIQESITFKGYEFVRIDGTTKASDRIKIVNDFQDGSTAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQNKDVLVYRLMTSGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQKQLEEEHACEDTVDDSFKAHIEFLKSQGIAGVSHHSLLFSKTAPVQDAPEDEVSRNHGNRYFGTSASTSLERPVDAAEFAFNPKEVKVSKKGSSPNSAGKWTESEIKDKIKRISQTLANKAMISRLPDGGEKLQQRLAQLNSELSKLKMEERNVVDLDEISGKFQKVLNV 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00546 1011 Pfam SNF2-related domain 321 613 IPR000330 GO:0005524|GO:0140658
Accr8g00546 1011 MobiDBLite consensus disorder prediction 162 181 - -
Accr8g00546 1011 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 318 493 IPR014001 -
Accr8g00546 1011 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 666 825 IPR001650 -
Accr8g00546 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 558 835 IPR027417 -
Accr8g00546 1011 SMART helicmild6 692 775 IPR001650 -
Accr8g00546 1011 Gene3D - 283 564 IPR038718 -
Accr8g00546 1011 MobiDBLite consensus disorder prediction 101 129 - -
Accr8g00546 1011 Coils Coil 971 991 - -
Accr8g00546 1011 SMART ultradead3 301 501 IPR014001 -
Accr8g00546 1011 CDD SF2_C_SNF 655 786 - -
Accr8g00546 1011 Gene3D - 565 864 IPR027417 -
Accr8g00546 1011 FunFam Protein CHROMATIN REMODELING 24 285 563 - -
Accr8g00546 1011 MobiDBLite consensus disorder prediction 238 268 - -
Accr8g00546 1011 Pfam Helicase conserved C-terminal domain 664 775 IPR001650 -
Accr8g00546 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 543 IPR027417 -
Accr8g00546 1011 MobiDBLite consensus disorder prediction 238 258 - -
Accr8g00546 1011 PANTHER SNF2/RAD54 FAMILY MEMBER 121 991 - -
Accr8g00546 1011 MobiDBLite consensus disorder prediction 115 129 - -
Accr8g00546 1011 MobiDBLite consensus disorder prediction 1 62 - -
Accr8g00546 1011 MobiDBLite consensus disorder prediction 36 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00546 Accr-Chr8 8539763 8548714 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00546 306 829 RAD5 or RAD16-like Gene Family AT1G02670 24.570 1.56e-38 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr8g00546 SNF2_N 1.7e-46 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00546 K20093 - gmx:100779283 1356.66