Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00539 ATGTCTGAAAGAGGAAAGAGGAAGGACGAACACGATCACGCGTCCGACGGCGATTCAGAGGGCCACGCGCCATCCAAGAAGTACCAAAAGAAGGATTCCGGTGATTCTGATGACATCGTCGTCTGCGAGATATCCAAGAACAGACGGGTGACCGTGAGGAACTGGAATGGCAAGATTTGGGTGGACATTCGTGAATTTTACGTCAAAGATGGGAAGCAATTGCCTGGAAAGAAAGGTATCTCACTGAGCATTGACCAGTGGAAAGTGCTTCGGGATCATGCTGATAAAATTGACAGCGCTCTTGCGGAGGATTAG 315 0.4921 MSERGKRKDEHDHASDGDSEGHAPSKKYQKKDSGDSDDIVVCEISKNRRVTVRNWNGKIWVDIREFYVKDGKQLPGKKGISLSIDQWKVLRDHADKIDSALAED 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00539 104 MobiDBLite consensus disorder prediction 1 36 - -
Accr8g00539 104 Pfam Transcriptional Coactivator p15 (PC4) 42 93 IPR003173 GO:0003677|GO:0006355
Accr8g00539 104 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 13 103 IPR045125 GO:0003713|GO:0060261
Accr8g00539 104 FunFam Putative transcriptional co-activator 32 104 - -
Accr8g00539 104 Gene3D Transcriptional Coactivator Pc4; Chain A 30 104 IPR009044 GO:0003677|GO:0006355
Accr8g00539 104 SUPERFAMILY ssDNA-binding transcriptional regulator domain 41 102 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00539 Accr-Chr8 8488234 8489850 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Accr8g00539 PC4 3.4e-26 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00539 K25815 - rcu:8270278 164.081