Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00520 ATGAACTGTGAATTGGAGTTACCTCCTGGGTTCAGGTTCCATCCGACGGACGAGGAACTCGTGAATCACTATCTGTGTACCAAATGTGCCGCTCAGTCCATTGCCGTTCCCATTATCAAAGAGATCGATCTCTACAAGTTTGATCCATGGCAACTTCCTGAAATGGCTCTGTACGGCGAGAAGGAATGGTACTTCTTTTCACCGAGGGACCGAAAATATCCGAACGGTTCGAGGCCGAACCGGGCGGCCGGAAGTGGGTACTGGAAAGCAACCGGAGCCGATAAGCCGATTGGTAAGCCGAAGCCAATGGGAATAAAGAAGGCACTCGTATTCTACGCCGGTAAGGCCCCCAATGGCATCAAAACAAACTGGATCATGCATGAATATCGCCTCGCTAACGTCGACAGATCCGCCGGCAAGAAAAAAAACCTAAGGCTTGATGATTGGGTGTTATGTCGAATTTACAACAAGAAAGGCACGATTGAGAAATACAATGTGGTGGATCAAAAACCCGGCAAGTTATTGGAATTCCATGACCATGAGACCAAACCGGAAATCAAACCGTACGACCACAATAAGGTGCAGGCACCGACCGCCGCGGCGGCGGTCACGAATGACCAATTCTACATGGACATGTCGGACTCGGTGCCGAGGCTGCACACGGATTCGAGCTGCTCGGAGCACGTGGTTTCGCCAGACGTCACGTGCGACAAGGAGGTACAGAGCGAGGCCAAGTGGAACGAGCTAGGGCTCGGAGAAGACGATGGGCTTGATTTTGTATTGAATTATATGAATAATCTCTCTGGAGAAGATCCTTTTGGCTCTTCTGTACAGTACCAAATGAACCAGCTCTCGCCATTGCAGGACATGTTCATGTTTCCACAAAAGCCATTTTGA 897 0.4983 MNCELELPPGFRFHPTDEELVNHYLCTKCAAQSIAVPIIKEIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKPMGIKKALVFYAGKAPNGIKTNWIMHEYRLANVDRSAGKKKNLRLDDWVLCRIYNKKGTIEKYNVVDQKPGKLLEFHDHETKPEIKPYDHNKVQAPTAAAAVTNDQFYMDMSDSVPRLHTDSSCSEHVVSPDVTCDKEVQSEAKWNELGLGEDDGLDFVLNYMNNLSGEDPFGSSVQYQMNQLSPLQDMFMFPQKPF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00520 298 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Accr8g00520 298 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Accr8g00520 298 Gene3D NAC domain 16 183 IPR036093 GO:0003677|GO:0006355
Accr8g00520 298 FunFam NAC transcription factor 16 161 - -
Accr8g00520 298 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Accr8g00520 298 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00520 Accr-Chr8 8014950 8016184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00520 1 298 NAC Transcription Factor Family AT1G01720 64.686 1.65e-126 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr8g00520 NAM 4.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00520 - - gmx:100170751 448.743