Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00478 ATGGCCGCAGAAGTTTGTTGTGGCTCTCTGCTCTTATCCGGTGAAACTCAGTTGCACTACCATCAACAACGGCAAGCAATACGAACCAGAACTCCAAGAAGCACTAGCAGATTACACTTCTCATCATCACTCTCACTCGTTCCTCTCGAAGTTTCCTTCTCTTCTTCTCTCTCCAAACATGGTCCCTTCTCCACCACTTTCCGCGCCAATAGGTTCAGAGTGTGCTGCCAGGTTGCTGCTGGTGGCGCCTACGACCTCAAATTCGCCGCTAAAGTCGGCCAGGACCGTCTCTCTAAGGTTCCTATCTCTAATGTAAGGAATTTCTGCATCATTGCTCATATTGACCATGGGAAATCAACATTAGCAGATAAATTGCTTCAAGTGACTGGTACTGTCCAACAGCGAGAAATGAAGGATCAGTTTCTTGATAACATGGATTTAGAGAGAGAAAGAGGCATCACAATTAAGCTCCAGGCAGCTCGAATGCGTTATGTGTGTGAAGATGAGCCATATTGTTTAAATCTAATTGATACTCCAGGGCATGTTGACTTCTCTTATGAGGTTTCCCGATCACTTGCTGCGTGTGAGGGTGCTCTTCTTGTTGTAGATGCTTCACAGGGAGTTGAAGCACAAACACTAGCTAATGTTTATTTAGCCTTGGAGAACAACCTTGAAGTTATACCTGTTTTGAATAAAATAGATCTTCCAGGCGCTGAGCCAGATCGAGTTATAAAAGAGATTGAAGAGGTTGTTGGGTTAGATTGTAGCAATGCAATCCTCTGCTCTGCAAAGGAAGGAATAGGTATAACTGATATTCTCAACGCAATTGTTTCAAGAATTCCACCTCCTGCTGAAACAGCTGAAAGGCCATTGAGGGCTTTAATTTTTGATAGTTACTATGATCCATATAGGGGCGTCATTGTATATTTCCGTGTTGTAGATGGGACTATAAAGAAAGGTGACAGAGTTTATTTTATGGCTAGTGGGAAGGATTACTTTGCTGATGAACTTGGAGTTTTGTCTCCCAATCAGCTTCAAGTTGAAGAATTGTATGCGGGTGAGGTGGGCTATCTTTCGGCATCTATAAGAACTGTGGCTGATGCTAGAGTGGGTGACACTATTACCCACTATGGCAGACAAGCAGAGAACTCTCTCCCTGGATATGAAGAAGCCACTCCGATGGTGTTTTGTGGCCTATTTCCTGTTGATGCAGACCAATTTCCTGAGCTACGTGATGCACTTGAGAAGCTACAGCTCAATGATGCTGCACTGAAGTTTGAACCTGAGACTTCAAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTTGGACTTCTCCATATGGAAATTGTTCAGGAAAGACTTGAGAGAGAATACAATCTGAGCCTGATAACAACTGCTCCAAGTGTTGTATATAGAGTGAACTGTGTAAATGGTGATACTGTTGAATGCTCAAATCCTTCTTTACTCCCTGAACCTGGAAAAAGGAAGTCAATTGAAGAGCCATTTGTTAAGATTGAGATGCTTACACCAAAGGATTACATTGGTCCACTTATGGAATTGGCTCAAGACAGAAGAGGGCAATTTAAAGAAATGAAATTTATCACTGAAAACAGAGCATCAATCACCTATGAATTGCCACTAGCAGAGATGGTTGGTGATTTCTTTGACCAGTTAAAGTCCAGAAGTAAGGGTTATGCTAGCATGGAATATGTTTTCATCGGATACAGGGAAAGTGATTTAATTAGACTTGACATACAGATAAATGGTGATCCAGTGGAACCATTGGCTACAATTGTTCACAATAATAAGGCCTATTCAGTAGGACGGGCTTTGACTCAAAAGTTGAAAGAGCTCATACCACGTCAAATGTTTAAAATTCCAATTCAAGCTTGTATAGGTTCAAAAGTGATTGCTAGTGAGGCTTTATCTGCAATAAGGAAAGACGTGTTAGCTAAATGCTACGGTGGGGACATTTCAAGAAAAAAGAAATTACTTAAGAAACAGGCTGAAGGAAAGAAAAGGATGAAAGCAATTGGAAAAGTGGATGTGCCACAAGAAGCCTTCATGGCGGTTTTGAAACTAGAAAAGGAGGTTATATGA 2103 0.4175 MAAEVCCGSLLLSGETQLHYHQQRQAIRTRTPRSTSRLHFSSSLSLVPLEVSFSSSLSKHGPFSTTFRANRFRVCCQVAAGGAYDLKFAAKVGQDRLSKVPISNVRNFCIIAHIDHGKSTLADKLLQVTGTVQQREMKDQFLDNMDLERERGITIKLQAARMRYVCEDEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEVIPVLNKIDLPGAEPDRVIKEIEEVVGLDCSNAILCSAKEGIGITDILNAIVSRIPPPAETAERPLRALIFDSYYDPYRGVIVYFRVVDGTIKKGDRVYFMASGKDYFADELGVLSPNQLQVEELYAGEVGYLSASIRTVADARVGDTITHYGRQAENSLPGYEEATPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGDTVECSNPSLLPEPGKRKSIEEPFVKIEMLTPKDYIGPLMELAQDRRGQFKEMKFITENRASITYELPLAEMVGDFFDQLKSRSKGYASMEYVFIGYRESDLIRLDIQINGDPVEPLATIVHNNKAYSVGRALTQKLKELIPRQMFKIPIQACIGSKVIASEALSAIRKDVLAKCYGGDISRKKKLLKKQAEGKKRMKAIGKVDVPQEAFMAVLKLEKEVI 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00478 700 FunFam Translation factor GUF1, mitochondrial 286 385 - -
Accr8g00478 700 Pfam Elongation factor Tu GTP binding domain 104 281 IPR000795 GO:0003924|GO:0005525
Accr8g00478 700 SMART EFG_C_a 498 586 IPR000640 -
Accr8g00478 700 CDD lepA_C 501 580 IPR035654 -
Accr8g00478 700 Pfam Elongation factor G C-terminus 499 581 IPR000640 -
Accr8g00478 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 309 IPR027417 -
Accr8g00478 700 FunFam Elongation factor 4 102 285 - -
Accr8g00478 700 Pfam Elongation factor Tu domain 2 305 375 IPR004161 GO:0005525
Accr8g00478 700 CDD LepA 106 283 - -
Accr8g00478 700 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 103 284 IPR000795 GO:0003924|GO:0005525
Accr8g00478 700 NCBIfam translation elongation factor 4 104 695 IPR006297 GO:0005525
Accr8g00478 700 FunFam Translation factor GUF1, mitochondrial 468 578 - -
Accr8g00478 700 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 143 158 IPR031157 -
Accr8g00478 700 Gene3D - 580 654 IPR038363 -
Accr8g00478 700 Gene3D - 102 285 IPR027417 -
Accr8g00478 700 Hamap Translation factor GUF1 homolog, organellar chromatophore [lepA]. 97 697 IPR027518 -
Accr8g00478 700 Pfam GTP-binding protein LepA C-terminus 588 694 IPR013842 -
Accr8g00478 700 SUPERFAMILY EF-G C-terminal domain-like 392 470 IPR035647 -
Accr8g00478 700 Gene3D - 468 579 - -
Accr8g00478 700 CDD EF4_III 393 468 - -
Accr8g00478 700 FunFam Translation factor GUF1, mitochondrial 386 467 - -
Accr8g00478 700 NCBIfam small GTP-binding protein domain 107 275 IPR005225 GO:0005525
Accr8g00478 700 Hamap Elongation factor 4 [lepA]. 100 698 IPR006297 GO:0005525
Accr8g00478 700 PANTHER TRANSLATION FACTOR GUF1-RELATED 87 695 IPR006297 GO:0005525
Accr8g00478 700 SUPERFAMILY EF-G C-terminal domain-like 499 593 IPR035647 -
Accr8g00478 700 Gene3D Translation factors 286 385 - -
Accr8g00478 700 Gene3D Elongation Factor G (Translational Gtpase), domain 3 386 467 - -
Accr8g00478 700 SUPERFAMILY Translation proteins 282 388 IPR009000 -
Accr8g00478 700 FunFam Translation factor GUF1, mitochondrial 580 654 - -
Accr8g00478 700 CDD EF4_II 291 376 - -
Accr8g00478 700 PRINTS GTP-binding elongation factor signature 107 120 IPR000795 GO:0003924|GO:0005525
Accr8g00478 700 PRINTS GTP-binding elongation factor signature 150 158 IPR000795 GO:0003924|GO:0005525
Accr8g00478 700 PRINTS GTP-binding elongation factor signature 190 201 IPR000795 GO:0003924|GO:0005525
Accr8g00478 700 PRINTS GTP-binding elongation factor signature 226 235 IPR000795 GO:0003924|GO:0005525
Accr8g00478 700 PRINTS GTP-binding elongation factor signature 174 184 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00478 Accr-Chr8 7335749 7343582 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00478 104 338 Eukaryotic Initiation Factors Gene Family AT3G22980 34.274 3.68e-27 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00478 K21594 - qsa:O6P43_023443 1165.6