Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00410 ATGCCTTTTGAAGTAATGGATCAGAGGGCTGTGTCTGCCTCATCACACTTCTTTGATGACATTTCCTTTTGCTCCGAGAAGAATGCGGGATCGCAGAGGCCAAAATCTATTCATGACCACTACCATCAAGGAAATAATAGAATGGCAGCATCACCTGGCAGCATTTTGAATGCTTTGTCACCTCGGGAAATTAGTGCAAAGACTAGCTGGTCAAAGTCACCAACAGGTCTGTCTGGTGAAGAAGGTAGTGTTGATATGTTTAAAGCCTCCAAGGAAGCATTAAATCATCATCCCAGATCTCAGTCTAATGCGCGTATGCTGCCAGCATCTAACCCATATGGTTTAATTGGCAATAAGATCATCACTAATGCTGCCTCACGTGAAAGTAGTTTATTCTCAAGCTCACTGTCTGAGATATTTACCCGGAAGATGAGGTTAACGGAGAATGATGTTCTACCTCAACAGCCTTTTACTGTTGGTTCGCTTCCTGAGGAGGAACCATTCAAATCTCTTGAAGAAATTGAGGCTGAAACTATTGGAAATCTCCTTCCTGATGAAGATGATCTATTTTCTGGTGCCATTGATGACTTAGGATTCAATATTCTTACTAAAACTGGTGATGACCTGGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGCTGGAAGGCGATGAACATCTAACTTCAGGAAAAAGAACCAGCGGTCCAGATGGAGATCCTGGTTGCTTTGGGGGCTTCAAAGGGAAACTTCCTTTTGGCGAACATCCTTCTAGAACACTTTTTGTTAGAAACATCAACAGCAATGTCGAAGATTCTGAGCTGAAGGCTCTCTTTGAGCAATATGGTGATGTCCGAACCACCTATACTGCTTGCAAGCATCGTGGATTTGTTATGATTTCTTATTATGATATAAGATCAGCACAAAAAGCAATGAAAGCTCTTCAAAACAAGTCGTTGAGGTCTAGGAAACTTGACATACATTATTCGATACCAAAGGTCAATTCTCCAGAGAAGGATATTAACCATGGTACATTGCTTCTATCTGGTCTTGATTCTTCTGTTTCACAAGATGAAATTCTTCAAATTTTTGGATTTTATGGAGAAATCAAAGAAATTTACCAATCTCCAGAAACGAATTATGACAAATTTATAGAGTTTTATGATGTGCGAGCTGCTGAAGCTGCTCTTCGTGCTCTGAACAAGAGTGAAATTGCTGGGAAGCAGATCAAGCTTGAACCCAGCCATCCTAGGGGTTCAAGTGCAACAAGTTTGATGCAGCAGTCTCAGAAGGGGCAGAATGAGTCTGATCTTAGTCAGAGTATGGGTGACTACTTATCACTAAGCCAGAGTGCAATAACGTCTTCTGGAGTAATTGCATCTGGCTGCTTGGATAATGGATCTGATCATGGATTTCCAGCAGCAATACGACAAACTATGGATACCTTACCGAGGAGTGTATTGCCATATATGAATTCTGGCATTCACAACACTGTGAGAGGGCCATCAATTCCTAGATTCCATCCTCATTCCCTACCCGAGTATCAAGATGGTGTAGCTTGTGGCAGTCCTTACAACTTTTCAAGAACCTTTAGCAATGTATCTGGTAATATGGGTCCAGGAGTGACAGATAGCTCTGACAGCAGGCACTCTCTGGGATTCGGTTCACCCGGGAAATTGATGGACTTTAATGGAGGAGGAAATGGGAGCCTTCCTAATCATGGGCTCTATCACATGTGGAGCGGATCGAATTTGCCCCAGCAAACTCCACCAGGTCCAATGGTTTGGCAGAAAACACCATCATTTGTTAATGGTGCTTGCGCTCCTTGCCTTCAACAGATGCCCGGCTTTCCCAGATCACCATCTCATATGATGAGAGCATCACATATAGACCACCATGTCGGTTCAGCACCAGTTGTTACCACCTCCCCATGGGACAGACGACATTCTTATTTGTCAGAGTCCCCTGATTCCTCTGGTTTTCACATGGGTTCTATTGGTAGTACAGGTTTTCCTGGTACATGGCAATTGCATCCTCCTGAATTTTCTTCTCACAAAGTGTTTCCTCATGTTGGTGGGAATGGCTTGGATTTGTCAGCCAATACTGGGCAGAGCTCCCCAAATCAGTTATCACATGTTTTCCCTGGGAGATATCCCATGACCTCAATGTCTAAGTTTGATTCTACCAGTGACAGAATGAGAAACTTGTATCACCGTAGAAGCGATGCTAACACTAACAGTGCTGACAAAAAGCAATTTGAACTTGACCTAGGTCGCATATTGAACGGAGAAGACACACGAACAACACTTATGATTAAGAATATTCCCAACAAGTATACTTCAAAAATGCTTCTTGCTGCCATAGATGAGCAATGTCGGGGAACTTATGACTTTTTGTATTTGCCAATTGACTTCAAGAACAAATGCAATGTTGGCTATGCTTTCATCAACATGACTGATCCTAGTCAGATTATTCCCTTCCACAAGGCTTTTAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTGGCTTCGCTTGCCTATGCTCGAATCCAGGGAAAAACTGCTCTTATTGCACATTTCCAAAATTCGAGCCTGATGAATGAAGACAAGCGTTGCCGCCCTATCCTCTTTCACACTGAGGGCCCAAATGCCGGTGATCCGGAACCTTTCCCCATGGGCACAAATATAAGATTGAGGCCGGGAAAATCGCGTGCTAGGAGCCCATCGGCTTTGACTAATGGAGAGGAGTCTTACAATGGAATAAGTTCTTCAATGGGCTCTTCAAAAAACTCAGACTGA 2808 0.4316 MPFEVMDQRAVSASSHFFDDISFCSEKNAGSQRPKSIHDHYHQGNNRMAASPGSILNALSPREISAKTSWSKSPTGLSGEEGSVDMFKASKEALNHHPRSQSNARMLPASNPYGLIGNKIITNAASRESSLFSSSLSEIFTRKMRLTENDVLPQQPFTVGSLPEEEPFKSLEEIEAETIGNLLPDEDDLFSGAIDDLGFNILTKTGDDLEDFDLFSSGGGMELEGDEHLTSGKRTSGPDGDPGCFGGFKGKLPFGEHPSRTLFVRNINSNVEDSELKALFEQYGDVRTTYTACKHRGFVMISYYDIRSAQKAMKALQNKSLRSRKLDIHYSIPKVNSPEKDINHGTLLLSGLDSSVSQDEILQIFGFYGEIKEIYQSPETNYDKFIEFYDVRAAEAALRALNKSEIAGKQIKLEPSHPRGSSATSLMQQSQKGQNESDLSQSMGDYLSLSQSAITSSGVIASGCLDNGSDHGFPAAIRQTMDTLPRSVLPYMNSGIHNTVRGPSIPRFHPHSLPEYQDGVACGSPYNFSRTFSNVSGNMGPGVTDSSDSRHSLGFGSPGKLMDFNGGGNGSLPNHGLYHMWSGSNLPQQTPPGPMVWQKTPSFVNGACAPCLQQMPGFPRSPSHMMRASHIDHHVGSAPVVTTSPWDRRHSYLSESPDSSGFHMGSIGSTGFPGTWQLHPPEFSSHKVFPHVGGNGLDLSANTGQSSPNQLSHVFPGRYPMTSMSKFDSTSDRMRNLYHRRSDANTNSADKKQFELDLGRILNGEDTRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPSQIIPFHKAFNGKKWEKFNSEKVASLAYARIQGKTALIAHFQNSSLMNEDKRCRPILFHTEGPNAGDPEPFPMGTNIRLRPGKSRARSPSALTNGEESYNGISSSMGSSKNSD 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00410 935 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 345 418 IPR000504 GO:0003723
Accr8g00410 935 CDD RRM3_MEI2_like 771 856 IPR034454 -
Accr8g00410 935 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 326 IPR000504 GO:0003723
Accr8g00410 935 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 412 IPR000504 GO:0003723
Accr8g00410 935 PANTHER RNA RECOGNITION MOTIF-CONTAINING 97 912 - -
Accr8g00410 935 MobiDBLite consensus disorder prediction 417 442 - -
Accr8g00410 935 MobiDBLite consensus disorder prediction 882 935 - -
Accr8g00410 935 Pfam RNA recognition motif 2 768 864 IPR007201 -
Accr8g00410 935 FunFam MEI2-like protein 5 isoform 2 249 343 - -
Accr8g00410 935 Gene3D - 344 446 IPR012677 -
Accr8g00410 935 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 333 IPR000504 GO:0003723
Accr8g00410 935 FunFam Protein MEI2-like 1 344 440 - -
Accr8g00410 935 MobiDBLite consensus disorder prediction 28 53 - -
Accr8g00410 935 MobiDBLite consensus disorder prediction 909 935 - -
Accr8g00410 935 CDD RRM1_MEI2_like 259 334 IPR034453 -
Accr8g00410 935 SUPERFAMILY RNA-binding domain, RBD 257 418 IPR035979 GO:0003676
Accr8g00410 935 SUPERFAMILY RNA-binding domain, RBD 770 854 IPR035979 GO:0003676
Accr8g00410 935 SMART rrm1_1 346 414 IPR000504 GO:0003723
Accr8g00410 935 SMART rrm1_1 770 846 IPR000504 GO:0003723
Accr8g00410 935 SMART rrm1_1 261 329 IPR000504 GO:0003723
Accr8g00410 935 Gene3D - 249 343 IPR012677 -
Accr8g00410 935 MobiDBLite consensus disorder prediction 409 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00410 Accr-Chr8 6357512 6363454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00410 255 431 Eukaryotic Initiation Factors Gene Family AT3G16380 24.242 1.82e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00410 - - pcin:129308788 1611.66