Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00406 ATGCAAATTGATTGTCTTGATGATTCGCCCTTGTTCCGCCAACAGATCCAAAACTTGGAAGAAAGTGCTGACTTATTAAGATCCAGATGCTGGAAATTCTACAAAGGATGTCGAAAGTACACGGAGGGGCTTGGAGGGGAATATGATAGGGACATCGCATTTGCAAATGCCCTTGAAGCATTTGGAGGAGGGCCTAATGATCCTTTTTTTGATGTTGTGGGAGGATCTATAATGACTAAATTCACTGTTGCTTTGAGAGAAATCAGTACATACAAGGAACTGCTTCGGTCACAGGTGGAGCACATGCTGAATGACCGATTACTACACTTTCTCAATGTTGAAATCCTTGATGCCAAGGAATCTCGTAAACGTTTTGACAAAGTCTCCATTCAGTATGAACAGGCACGTGATAAGTTTATGTCTTTGAGGAAAAGCGCCAAGTTGGACACTGTCGCTGCCGTAGAAGAGGAAATGCACAATGCAAGGAACACATTTGAGGAAGCCCGTTTCAACCTGGTTAGTGCTCTCAACCACGTTGAGGCCAAGAAGAGATTTGAGTTTTTGGAGGCTGTTCCTGGAATTATGGATGCTCATCTTCGATATTTTCAACAGGGATATCAACTATTCCAGCAGATGGAACCTTTCATCAGCGAGGTTCTGAGTATTGCACAACAGTCGAGAGAAAATTATAATACGGAGCAGATTTCCCTTCTTGAAAGAATTCAAGAGTACAAAAAACAAATTCATCAAGATAGCAAGCATAGCTCGAACGGCCCTTCTCCTAATAGAGACATGCAGGCCTTTTCTAGGATACCGAATGATGTGGCCGATGCTGTAATGGAATCTGCTGTAAATGGAACGGTTCAAATTCTTCGACAAGGATATCTGTCAAAGCGGTCCTCCAATCTGAGAGGGGCATGGAAGAAAAGGTATTTTGTTCTTGATAGTCGAGGAATGTTATACTACCATCGCAAACCAGGGAACTGGTTGCAATCTCACGGCGGCGGCCAACCATCTGCAGCAAAGAATAATTACGCAGAACCTAGTCCTGGGATTTTGAGTCGGTTTGCCCATCACCATGCTGTTGTCGATGAAAAAACTGCCGCACGTCGTGCAGTGAACTTGCTAACATCAACCATCAAGCTTGATGCTGAGCAGAACGATTTAAGATTTTGCTTCAGAATTATTTCACCGACAAAAGCCTTCACACTGCAGGCAGAAAATTCGGCGGACCAAATGGACTGGGTTGAAAAGATAATAGGAGTAATTGCCTCCTTGTTGAGTGCCCAAACAATAGAAAAGCCTCCCTCAGCTGACTCTGAATGCAATGATGGTAACCCTGGGAATGCGTTGGAAAATCCTCCGGTTGATGATCAGGCTGTAAAAAGTGAAAAGCCAATTGATATCCTCAGAAAGGTGTGTGGGAATGACGAGTGCGCTGATTGTGGTCAACCTGATCCGGACTGGGCATCCTTAAACCTCGGCATTCTTATATGCATTGAATGTTCTGGTGTGCATCGTAATCTTGGTGTACATATATCTAAAGTAAGATCGTTGACACTGGATGTGAAAGTCTGGGACGCTTCTGTTTTGGGCTTGTTTGAGTCTCTGGGTAATCTCTTTGCGAACTCTGTTTGGGAAGAGCTGTTGCATTCACCAAGTAATGCAGCTGATATGCCTCTTTGTTCATTTAAGGTCAGAAATAAATTATTTCATGCAAAGAAACCAGAACCCGATGATCCTATTTCTTTGAAGGAGAGGTTCATTCACGCAAAGTATTTGGAGAAGGTCTTTGTTAACCGGAAGAAGAAAACCGAACGTATTAAATCACTGCCTCACCATGTTTGGGAAAGCATCTGTGCGAACGACAAGAGGGCAGTGTACCGACAAATTGTCAAGTCAGATGTGGATCTCAATGCTATCTGTGATCAAATATCATATGGTGGGGCTTCTTGTCTCTTAACTCCATTAGCTGGAACAGGTAATTCTGAGGTGCCTTCTTCAAGTAATATAGACTCGTCATCAAAAAGAGAAAATCAGCCGACAGAGTTGCGACCCAAAAAAACAGAAAATCAGCGGGCAGAGGATAAACAAGATTGTTCTAGTTCTAGTGTGCTACATCAGGCATGTCTAACTGCCGATTCAAGCATGGTGGAGCTCCTTCTCCAGTATGGTGCAGATATAAATGCTCCAGATTCAAGAGGTCAGACACCACTGCATTGTTGTATAACCAATGGCAAGAGCGCAACTGCAAAATTGCTTGTAGCAAGAGGGGCCAATCTTGCCGCTGTAGATAAAGAAGGCAAAACTCCTGTTGAGCTTGCTACGAGATCCTGTTCTATTGGCACTGATGTTTTCTCTCTCTTACTGAGCAGATAG 2379 0.4351 MQIDCLDDSPLFRQQIQNLEESADLLRSRCWKFYKGCRKYTEGLGGEYDRDIAFANALEAFGGGPNDPFFDVVGGSIMTKFTVALREISTYKELLRSQVEHMLNDRLLHFLNVEILDAKESRKRFDKVSIQYEQARDKFMSLRKSAKLDTVAAVEEEMHNARNTFEEARFNLVSALNHVEAKKRFEFLEAVPGIMDAHLRYFQQGYQLFQQMEPFISEVLSIAQQSRENYNTEQISLLERIQEYKKQIHQDSKHSSNGPSPNRDMQAFSRIPNDVADAVMESAVNGTVQILRQGYLSKRSSNLRGAWKKRYFVLDSRGMLYYHRKPGNWLQSHGGGQPSAAKNNYAEPSPGILSRFAHHHAVVDEKTAARRAVNLLTSTIKLDAEQNDLRFCFRIISPTKAFTLQAENSADQMDWVEKIIGVIASLLSAQTIEKPPSADSECNDGNPGNALENPPVDDQAVKSEKPIDILRKVCGNDECADCGQPDPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDASVLGLFESLGNLFANSVWEELLHSPSNAADMPLCSFKVRNKLFHAKKPEPDDPISLKERFIHAKYLEKVFVNRKKKTERIKSLPHHVWESICANDKRAVYRQIVKSDVDLNAICDQISYGGASCLLTPLAGTGNSEVPSSSNIDSSSKRENQPTELRPKKTENQRAEDKQDCSSSSVLHQACLTADSSMVELLLQYGADINAPDSRGQTPLHCCITNGKSATAKLLVARGANLAAVDKEGKTPVELATRSCSIGTDVFSLLLSR 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00406 792 CDD ArfGap 467 593 - -
Accr8g00406 792 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Accr8g00406 792 ProSiteProfiles PH domain profile. 289 424 IPR001849 -
Accr8g00406 792 SMART arf_gap_3 464 606 IPR001164 GO:0005096
Accr8g00406 792 SUPERFAMILY PH domain-like 289 440 - -
Accr8g00406 792 CDD BAR_SFC_plant 15 215 IPR035670 -
Accr8g00406 792 Pfam PH domain 291 423 IPR001849 -
Accr8g00406 792 Gene3D - 672 782 IPR036770 -
Accr8g00406 792 ProSiteProfiles Ankyrin repeat profile. 701 733 IPR002110 GO:0005515
Accr8g00406 792 ProSiteProfiles Ankyrin repeat region circular profile. 734 766 - -
Accr8g00406 792 SUPERFAMILY ArfGap/RecO-like zinc finger 464 601 IPR037278 -
Accr8g00406 792 Gene3D Arfaptin homology (AH) domain/BAR domain 3 250 IPR027267 -
Accr8g00406 792 ProSiteProfiles Ankyrin repeat region circular profile. 701 732 - -
Accr8g00406 792 Gene3D Arf GTPase activating protein 450 608 IPR038508 -
Accr8g00406 792 ProSiteProfiles ARF GTPase-activating proteins domain profile. 464 606 IPR001164 GO:0005096
Accr8g00406 792 Gene3D - 290 428 IPR011993 -
Accr8g00406 792 Coils Coil 151 171 - -
Accr8g00406 792 Pfam BAR domain of APPL family 4 232 IPR004148 GO:0005515|GO:0005737
Accr8g00406 792 SUPERFAMILY BAR/IMD domain-like 4 312 IPR027267 -
Accr8g00406 792 Pfam Ankyrin repeats (3 copies) 706 790 IPR002110 GO:0005515
Accr8g00406 792 MobiDBLite consensus disorder prediction 663 700 - -
Accr8g00406 792 ProSiteProfiles Ankyrin repeat profile. 734 766 IPR002110 GO:0005515
Accr8g00406 792 PANTHER CENTAURIN/ARF 4 788 IPR045258 GO:0005096
Accr8g00406 792 CDD PH_ACAP 292 428 - -
Accr8g00406 792 SMART ANK_2a 701 730 IPR002110 GO:0005515
Accr8g00406 792 SMART ANK_2a 734 763 IPR002110 GO:0005515
Accr8g00406 792 Pfam Putative GTPase activating protein for Arf 467 601 IPR001164 GO:0005096
Accr8g00406 792 SUPERFAMILY Ankyrin repeat 696 781 IPR036770 -
Accr8g00406 792 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 452 607 - -
Accr8g00406 792 MobiDBLite consensus disorder prediction 678 697 - -
Accr8g00406 792 MobiDBLite consensus disorder prediction 663 677 - -
Accr8g00406 792 Coils Coil 227 247 - -
Accr8g00406 792 MobiDBLite consensus disorder prediction 434 458 - -
Accr8g00406 792 PRINTS HIV Rev interacting protein signature 518 539 IPR001164 GO:0005096
Accr8g00406 792 PRINTS HIV Rev interacting protein signature 476 495 IPR001164 GO:0005096
Accr8g00406 792 PRINTS HIV Rev interacting protein signature 495 512 IPR001164 GO:0005096
Accr8g00406 792 Coils Coil 118 138 - -
Accr8g00406 792 SMART PH_update 290 426 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00406 Accr-Chr8 6281256 6295062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00406 476 611 C2H2 Transcription Factor Family AT4G21160 41.606 1.67e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00406 K12489 - gmx:100797073 948.732