Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00403 ATGATTTCTGGAGTAAGCGGCGTCGCTTGGTTGGACGAAAACACAAAAGGAGACGACTCTACTGCTCCATCTTCATGGGCTAACGTGAACGCCAACATCAACATCGACAAAAACCAAAACCAGAGCCATTCTGGTTTTGTCCAGAACAAAGACGAGATGGGTTCTCTCTGTGCTTTCAAACCCATTCTTGAAATCGATGACGATTGGTACATCGCCGCCAACAATGTCATCCATAATCAACCAGATATTATCAGAGACATCACTTTCTCTCCCAACTTCGCCGACCAAGATAATTTATTGCTGAACCCAGTGGATTCATCCTCCTCGGGTTCCCCATCTAACACCGTCTTCAACAATCTCGACCCATCTCAGCTTCCGTACTTTCTTCCTCCTCCAAAACCCACCTTACCGTCTCTTCTTAATGTCGCCACTAGTAACAATCCTTTAGACCATGGTTTTGATGTGGGTTGCGATGTTGGGTTTCTTGAGCCTCAAGCTTCGAGCTCTAGTCTTCTGCGAGGCTTCACCGATTTCAGCTCAAATAACAACAACCAGATAAGCCTTCCTAATTTATGCTCAGATCCACGAGTCCCAACGTCAGGTATATCTAAGGTAACTGATAACAGTTTCTCAGGTTTTCGGGGTTTTGATGAGGAAGGTCTTGGAAAACCGCTATTCCTCAATAGACCCAAAATTTTGAGACCCCTTGAATCATTACCTCCGTCAGGAGCGCAGCCAACTCTGTTTCAGAAGAGGGTGGCTTTTCGAAAGAAGCTAGCGAACAACAATACTGAGAGAGACGGGGGAAAGAGTGAAATCGGAGAGGGGAACGAGAAGAAGAGGAAGATGGGTAGGTGGGAAGAAATGGAAGACGCTAGCCTTGATGGGTCTGGGTTGAATTACGATTCCGATGAATTCACTGAGAATACGACGAGGACGGAGGAGAACGGCAAGAATGGAGGAAGCAACTCGAATGTGAACAGTGCGGTTACTGGTGGTGGTGGTGGTGACGGTGGCGATAAGAAGGGGAAGAAGAAGGGAATGCCTGCGAAGAATTTGATGGCTGAACGACGTCGTCGGAAGAAGCTCAATGATAGACTGTATATGTTGAGGTCCGTTGTTCCAAAGATTAGCAAGATGGACAGGGCTTCAATCCTTGGGGATGCAATTGAGTACCTTAAGGAGCTTCTGCAAAAGATCAATGACATCCATAATGAATTGGAGTCAACACCTTCTGGCTCTTCACTAAGCACTCCTGCCCCCAGCTTTCATCCTCTGACTCCTACTCCGCCTGCATTACCCAGCCGTATAAAGGATGAACTCTGCCCCAGCTCATTGCCAAGCCCGAATGGCCAACCTGCGAGGATTGAGGTTCGGATGCGTGAAGGAAAAGCTGTGAATATCCACATGTTTTGTGGTCGCAAGCCTGGTATCTTGCTTTCAACCATGAAGGCTATGGACAACCTTGGACTAGACATCCATCAAGCTGTTATTAGCTGTTTTAATGGATTTGCCATGGATATCTTTCGAGCTGAGCAATGGAAGGAAGGTCAGGAAGTTCTTCATCCGGAGCAAATCAAAGGAGTACTGTTGGAGTCAGCTGGCTACCATGGCGTTATCTAG 1623 0.4707 MISGVSGVAWLDENTKGDDSTAPSSWANVNANINIDKNQNQSHSGFVQNKDEMGSLCAFKPILEIDDDWYIAANNVIHNQPDIIRDITFSPNFADQDNLLLNPVDSSSSGSPSNTVFNNLDPSQLPYFLPPPKPTLPSLLNVATSNNPLDHGFDVGCDVGFLEPQASSSSLLRGFTDFSSNNNNQISLPNLCSDPRVPTSGISKVTDNSFSGFRGFDEEGLGKPLFLNRPKILRPLESLPPSGAQPTLFQKRVAFRKKLANNNTERDGGKSEIGEGNEKKRKMGRWEEMEDASLDGSGLNYDSDEFTENTTRTEENGKNGGSNSNVNSAVTGGGGGDGGDKKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQKINDIHNELESTPSGSSLSTPAPSFHPLTPTPPALPSRIKDELCPSSLPSPNGQPARIEVRMREGKAVNIHMFCGRKPGILLSTMKAMDNLGLDIHQAVISCFNGFAMDIFRAEQWKEGQEVLHPEQIKGVLLESAGYHGVI 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00403 540 MobiDBLite consensus disorder prediction 259 360 - -
Accr8g00403 540 Pfam Helix-loop-helix DNA-binding domain 354 396 IPR011598 GO:0046983
Accr8g00403 540 MobiDBLite consensus disorder prediction 408 422 - -
Accr8g00403 540 CDD bHLH_AtAMS_like 350 420 - -
Accr8g00403 540 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 228 536 - -
Accr8g00403 540 MobiDBLite consensus disorder prediction 338 360 - -
Accr8g00403 540 FunFam BHLH transcription factor 343 411 - -
Accr8g00403 540 MobiDBLite consensus disorder prediction 408 453 - -
Accr8g00403 540 Gene3D - 341 411 IPR036638 GO:0046983
Accr8g00403 540 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 396 IPR011598 GO:0046983
Accr8g00403 540 MobiDBLite consensus disorder prediction 259 292 - -
Accr8g00403 540 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 350 418 IPR036638 GO:0046983
Accr8g00403 540 MobiDBLite consensus disorder prediction 313 331 - -
Accr8g00403 540 SMART finulus 353 402 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00403 Accr-Chr8 6200237 6204988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00403 59 528 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 49.487 1.47e-121 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr8g00403 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00403 - - cave:132174704 624.78