Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00397 ATGGCAGCTTTTTCTCATTGCTCCTTTCTCTTGTCACCTTCCTGCGACCAACCTCTCTTAAATTCCACTCCCCACCACCACCATACTCACCCTTCTTCTTCCAACGAAACTGACACGAATCAGAGCTCCGGCATGACTGTTAACGATCATGATGAGCCTCCTTCCGTCCCCAAAACCCACTCCGTGGCCGCCGCAGACACCTCCATGCTCGGCATCGCTAAGAAGAAGAAGAAGAACAAGAAGGAAAATTACAAAAATGGTCCTTCCAAGGAGGGTAGAGAAGGAAGAAACAAGAAACAGAAGAAGAGCATCAATGGTAATGCTGTGGTGAAACAAGAGGAAAAGGCAAAAATCACAAAAGAGCCCCCAACAGGCTATATCCATGTCAGAGCTAGGAGGGGCGAAGCAACGGACAGCCACAGCCTCGCCGAGAGGGTGAGAAGAGAGAGAATAAGTGAGAGGATGAGGATGTTGCAACGACTCGTACCAGGTTGTGACAAGATTACTGGGAAAGCGCTCGTGTTAGACGAAATCATCAATTATGTTCAGGCCCTTCAGAATCAAGTTGAGTTTTTGACAATGAAGCTTGCTTCTGTGAATTCCAATATGTACGGAGACTTCACAATGGGACAAGATACTCTCATGGGTGCACCAGAGAGATTAAACAGTGATGCTTCGCCTCTGCTACCACCTGTTCCACAATGCAGTATCAATGAGGCCCCAAATTTTGCTGATGATTATTCTTCCGCCACTTTTTTCCTTCAAGGAGGGAGATCAAATAATAATGTCTTCTCTTCCCTGGATGTTGTTGGAGAGTTTTGGGCTGGAGAGGAAGACCAACGAAAAAAACTTCCTAATCCTTGTGACTTCAACACCAACTTATGGTCCTTTCAATTTTAG 900 0.46 MAAFSHCSFLLSPSCDQPLLNSTPHHHHTHPSSSNETDTNQSSGMTVNDHDEPPSVPKTHSVAAADTSMLGIAKKKKKNKKENYKNGPSKEGREGRNKKQKKSINGNAVVKQEEKAKITKEPPTGYIHVRARRGEATDSHSLAERVRRERISERMRMLQRLVPGCDKITGKALVLDEIINYVQALQNQVEFLTMKLASVNSNMYGDFTMGQDTLMGAPERLNSDASPLLPPVPQCSINEAPNFADDYSSATFFLQGGRSNNNVFSSLDVVGEFWAGEEDQRKKLPNPCDFNTNLWSFQF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00397 299 CDD bHLH_AtBPE_like 125 204 - -
Accr8g00397 299 SMART finulus 141 191 IPR011598 GO:0046983
Accr8g00397 299 MobiDBLite consensus disorder prediction 84 101 - -
Accr8g00397 299 FunFam Basic helix-loop-helix transcription factor 132 204 - -
Accr8g00397 299 Coils Coil 182 202 - -
Accr8g00397 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 185 IPR011598 GO:0046983
Accr8g00397 299 Pfam Helix-loop-helix DNA-binding domain 139 186 IPR011598 GO:0046983
Accr8g00397 299 Gene3D - 132 205 IPR036638 GO:0046983
Accr8g00397 299 MobiDBLite consensus disorder prediction 15 117 - -
Accr8g00397 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 200 IPR036638 GO:0046983
Accr8g00397 299 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 31 216 IPR024097 GO:0006355
Accr8g00397 299 MobiDBLite consensus disorder prediction 15 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00397 Accr-Chr8 6074309 6075832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00397 75 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 57.576 2.66e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr8g00397 HLH 6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00397 - - gmx:100796018 225.713