Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00368 ATGGACTGGAATATGAAGGAAGCGTCATGGGATTTGGCTGAATTAGATGAAGCAACAGGCTTACCTAACATGGAAGAAACAGTTGATGGGTCAAGCAGATTTGGAAGTTGTGATAGAAGTAATAGAGGGGAATTTTCTGTGGATTTGAAGCTTGGTCAAGTGGGGAATTCTAGTAGCAGTAGTAATGAACCAGTAGCAGCATCAGTAGTGGCCAATAAGTGGAAAGATGTTGTTGGAGGAGTCTCCAAAGTGATGATGACATCATCTTCTTCCTCGGGATCATCTAAGAGAGCTCGAGCGATTAACAATGGAAACCAGACAGTATCATGTCTTGTGGATGGGTGCAATTCAGATCTTAGTAATTGTAGGGACTATCACAGACGCCATAAGGTATGTGAACTCCATTCTAAGACCCCGGTGGTAAGAATTGGCGGCCACAAGCAAAGGTTCTGTCAACAATGTAGCAGGTTTCATTCGCTGGAGGAGTTTGACGAAGGGAAGAGAAGTTGCAGGAAGCGATTAGATGGACATAACAGACGGAGGAGGAAGCCACCGCAGGCGGCGGCAGAAGGGGTAGGGGGAAGATGTGGAAGCTTTTTGTCCAATTACCAACAAGGCACCCACCGCAGCTTGTTGCCCTTCTCAAGCTCACATTTGTATCCTTCCACTGCGGCTATGGTTCACCCTGGTTGGAATACAGATGTTAGGCTTCACCACCACCATCATAATCACTTGGTTGATCACTTTCTAGGATCTACGCCCTCGTCGTCATCTTATACAGAAGCAAACAACAAGAAGCAGCAGCTAGCATTCTTGCAAGGTGATCACAACTCAGCAATAACAATGGAGAACACCCAGAGTAGCCACCAGCAAGCTCTACCAAAACCACCACCACCTGCTCCTTCTGTGTGCCAAACGTTTCTGAGAGCGGCGCCATTATTGCCGGCAGCTCTACTTCAACAGGACGGCGGCGACCACCACCATGACTCTCACTGTGCTCTCTCTCTTCTGTCATCCCCACAGACGCACACAAGTGGGAGTGGTTTGAGCCAAATGGTGCAGCCTCATCATCAACAACAAGCCATCTCAATTATGCAGCAGCACCAACCCTTAGGACTGAGCCTCCATGATCATGGCCTGGAGACGGTGGATCCGGTCATGGTTCATCATGGGAGTGACCATTCTCCGACGACTACGTATAACATGAACGAGGCTCCTCCTCCATTTCCTTTTCATTGGGACTAG 1245 0.4835 MDWNMKEASWDLAELDEATGLPNMEETVDGSSRFGSCDRSNRGEFSVDLKLGQVGNSSSSSNEPVAASVVANKWKDVVGGVSKVMMTSSSSSGSSKRARAINNGNQTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPVVRIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPPQAAAEGVGGRCGSFLSNYQQGTHRSLLPFSSSHLYPSTAAMVHPGWNTDVRLHHHHHNHLVDHFLGSTPSSSSYTEANNKKQQLAFLQGDHNSAITMENTQSSHQQALPKPPPPAPSVCQTFLRAAPLLPAALLQQDGGDHHHDSHCALSLLSSPQTHTSGSGLSQMVQPHHQQQAISIMQQHQPLGLSLHDHGLETVDPVMVHHGSDHSPTTTYNMNEAPPPFPFHWD 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00368 414 MobiDBLite consensus disorder prediction 174 193 - -
Accr8g00368 414 Gene3D - 101 171 IPR036893 GO:0003677|GO:0005634
Accr8g00368 414 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 54 387 IPR044817 GO:0003677
Accr8g00368 414 Pfam SBP domain 110 183 IPR004333 GO:0003677
Accr8g00368 414 FunFam Squamosa promoter-binding-like protein 14 101 171 - -
Accr8g00368 414 SUPERFAMILY SBT domain 108 186 IPR036893 GO:0003677|GO:0005634
Accr8g00368 414 ProSiteProfiles Zinc finger SBP-type profile. 107 184 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00368 Accr-Chr8 5451451 5454500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00368 1 278 SBP-box Gene Family AT5G50670 44.781 4.23e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Accr8g00368 SBP 1.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00368 - - gmx:100805328 361.688