Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00340 ATGGTTTCAACGAGACGAAGTGGATCTCTCTCTGGCAACAATTCCAAAAGATCTTCTTCTTCGGATGATAATCCTCCCTCACCGAAGCGTCAAAAGGCTGAAAATGGTGGTCCATCGGAGAAACCGAAGCCGGCAGCGGAGAATTCTAAAGAAGTGAGCACCCCTGAGCCGGCGGCTGATCCTGGAGAATGCGATGCTCAGATCGCTGGAGATGGCACTGGTGATGGTCTGACTTCTGGCAAGGGTGATGCTGCGGCGGCTGTCGCGGTGGCGCTGCCGATCGGTGATGGGTCTTCGCCGACTTTGGTGGTTGACAAGCCAAGGGGTTCTTTGTCGTCTTGGAACATTTATCAGAAGCAAAGTCCAAGTTCTGAGACCTCAGCGCCTTGGTGCAGGCTCCTGTCGCAGTCTGCCCTGAACCCAAATGTTTCCATTTGCACACCCAACTTCACTATTGGTTCCAGTAGAAATTGCAATTTCCCCCTGAAGGATCAGACTATAAGTGGCAATCTATGCAAGATTAAGCATACACAGCGTGAGGGGTGTGCTGTAGCCTTGCTAGAGAGTACGGGTAGCAAAGGATCCGTGCTAGTTAATGGGGCACTTGTCAAGAAGAACACCAACTGTATGCTTAACTCGGGTGATGAAGTGGTCTTTGGTTTGCTGGGAAATCATTCTTATATCTTTCAGCAGCTAAATGCTGACGTTGCAGTTAAGGGTGCAGAAATTCAGGGTGTAGGGAAATTTCTGCAGCTTGAAAGGAGAACGGGAGACCCCTCAGCTGTGGCTGGGGCTTCCATTTTGGCTTCTCTTTCAAACTTCAGACAAGATATCCCGAGATGGAAATCTCTGTCTCAGAATACAAATAAAGCTCACCAGGGCACTGATGTCTCTGCTCATTCTGCTCATCACGATAATACAGAAATTGAGCTTGATGGTCCGGAAGGCAACTCAGCTCCAAACGTAGAGAGTGACAAAGCAGCTGACGTTGGAGCAAGTGACAAGAATCATCCAATGGAATGCGATCCAGATGCTAACAAGGAGGCAGGCAATGTATTGGAAGAAAGAAATGGGACGAGGGATATGCTGGCAGCATCAACCTCGAGCATGTCTGTGCGCTGTGCGGTGTTCAGAGATGATGTTTGTGATGCAATATTGGATGGAAAAGACATAGAAGTGTCATTTGACAACTTTCCCTATTATTTAAGTGAGAACACAAAAAATGTCTTGGTTGCAGCTTGCTTTATTCATTTGAAGCACAAGGAACATGCAAAATACACATCAGATCTCACAACTATCAACCCACGCATTTTACTTTCTGGACCTGCTGGGTCAGAAATATATCAGGAGATGCTGGCAAAAGCCCTTGCTAATTATTTTGGAGCTAAGTTGCTCATATTTGATAGCCATTTGCTTTTGGATGGTTTATCAACCAAGGAAGCAGAGCTGATCAGAGATGGAATTCTTGATGAAGAAAACTTCGTCTGCTTCAAGCAAAGTTCTACAGCCACCGACTTGGCTAGGAACATGGAACCATCAACTAGTGAAACGGATACGCCTAGCCCTTCAAATGCACCTACTTCATATGGCCTTGAATCTCAACCCAAAACTGAGACTGATGCCACGCCTTCTACTTCTGGGACAACTAAATATTGTTTGTTTAAAATAGGTGACAGGGTGAAATATAGTTGCTCATCTTCTGGTGGCTTGTATCAAACATGTGCAAGGGGCCCGCCTAATGGAAGTCGAGGGAAGGTTGTCTTATGTTTTGATGATAATCCTTTTGCCAAAGTTGGTGTAAGATTTGATAAGCCCATACCTGACGGAGTTGATCTTGGAGGTGCCTGTGAGGGGGTTCAAGGATTTTTCTGCAATGTTGGCGATCTTCGATTGGAAAACAGTGTTGTGGATGAGTTAGATAAATTACTTATCAATACATTATTTGAGGTTGTTCAGAGAGAGAGCAGAACTGCACCTTTCATTTTGTTTATGAAAGATGCTGAGAAGTCTATTGTGGGAAATGGTGATGCATATTCATTTAAAAGTAAGCTCGAAAAGCTTCCAGACAATGTTGTTGTTATAGGCTCGCATACTCACACTGACAGTCGGAAGGAGAAGTCACATCCGGGGGGTTTGCTTTTTACAAAATTTGGCAGCAACCAGACTGCCCTTCTGGACTTGGCTTTCCCGGATAGTTTTGGAAGATTGCATGAGAGGGGGAAGGAAGTCCCAAAGCCAAACAAAACTTTGACTAAGCTTTTCCCTAATAAAGTTGCAATTCACATGCCACAGGATGAGGCACTTCTAGCATCCTGGAAGCAGCAGCTAGATCGAGATGCCGAGACTCTGAAAATCAAAGCAAATTTGCATCACCTGCGCACAGTTTTGAGTCGTTGTGTGATGGAATGTGAAGGACTTGAGACTTTGTGCATTAAAGACCAGGCACTTACTAATGAAAATGCAGAGAAGATAATTGGCTGGGCTTTGAGCCACCACCTCATGCAGAACCCTGAAGCCGATTCTAATTCAAAGCTTGTATTGTCCTGTGAAAGCATCCAGCATGGAATTGGAATCTTGCAGGCCATTCAAAATGAGTCCAAGAGCTTGAAGAAGTCTCTGAAGGATGTTGTAACAGAAAATGAGTTTGAAAAGAGGCTGTTGGCTGACGTAATTCCTCCTAGCGACATCGGTGTTACTTTTGATGACATCGGAGCTCTTGAAAATGTCAAGGATACACTGAAGGAGTTGGTGATGCTTCCTTTGCAAAGGCCGGAGCTTTTTTGCAAGGGGCAATTAACCAAGCCTTGCAAGGGTATCTTATTGTTTGGACCCCCAGGAACAGGAAAGACAATGCTTGCAAAGGCGGTTGCCACTGAAGCTGGTGCTAACTTCATCAACATTTCCATGTCAAGCATTACATCTAAGTGGTTTGGTGAGGGTGAAAAATATGTGAAAGCTGTCTTCTCTCTGGCCAGTAAAATTGCTCCCAGCGTTATATTTGTTGATGAAGTTGACAGCATGTTGGGTAGGAGGGAAAATCCAGGGGAGCATGAGGCCATGCGCAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGTACGAAGGAGACCGAGCGAATTATTGTACTTGCAGCCACTAATAGGCCTTTTGACCTTGACGAGGCTGTCATCCGGAGGCTACCACGAAGATTGATGGTCAATTTGCCAGATGCTCCGAATAGAGCGAAAATATTGAGAGTCATACTAGCTAAAGAGGACTTATCTCCTGATGTTGACTTGGATGCAGTTGCCAATATGACTGACGGATATTCTGGAAGTGATCTGAAGAATCTTTGCGTGACTGCGGCACATCGTCCAATTAAAGAGATATTAGAGAAGGAAAAAAAGGAGCGTGCTGCTGCTCTATCCGAAGGTAGGCCTCCTCCGGCATTAAGTGGCAGTGCTGATATCCGGTCTTTAAACATGGAGGATTTTAAAGACGCTCATGAACGGGTATGTGCAAGTGTTTCTTCCGAATCCGTAAATATGACTGAGCTCGTACAATGGAATGAACTATACGGCGAAGGTGGTTCGAGAAGAAAGAAAGCACTCAGCTATTTCATGAGAAGAGCCTCTCAGAATTTTGGCCATGCTCCTACAGCTTTTGTTTTGTTCCTCATCCCCTCGCTGCCACCACAAAGAAAGAGCATTGAAATATTTTCCCCCTAG 3714 0.4518 MVSTRRSGSLSGNNSKRSSSSDDNPPSPKRQKAENGGPSEKPKPAAENSKEVSTPEPAADPGECDAQIAGDGTGDGLTSGKGDAAAAVAVALPIGDGSSPTLVVDKPRGSLSSWNIYQKQSPSSETSAPWCRLLSQSALNPNVSICTPNFTIGSSRNCNFPLKDQTISGNLCKIKHTQREGCAVALLESTGSKGSVLVNGALVKKNTNCMLNSGDEVVFGLLGNHSYIFQQLNADVAVKGAEIQGVGKFLQLERRTGDPSAVAGASILASLSNFRQDIPRWKSLSQNTNKAHQGTDVSAHSAHHDNTEIELDGPEGNSAPNVESDKAADVGASDKNHPMECDPDANKEAGNVLEERNGTRDMLAASTSSMSVRCAVFRDDVCDAILDGKDIEVSFDNFPYYLSENTKNVLVAACFIHLKHKEHAKYTSDLTTINPRILLSGPAGSEIYQEMLAKALANYFGAKLLIFDSHLLLDGLSTKEAELIRDGILDEENFVCFKQSSTATDLARNMEPSTSETDTPSPSNAPTSYGLESQPKTETDATPSTSGTTKYCLFKIGDRVKYSCSSSGGLYQTCARGPPNGSRGKVVLCFDDNPFAKVGVRFDKPIPDGVDLGGACEGVQGFFCNVGDLRLENSVVDELDKLLINTLFEVVQRESRTAPFILFMKDAEKSIVGNGDAYSFKSKLEKLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHERGKEVPKPNKTLTKLFPNKVAIHMPQDEALLASWKQQLDRDAETLKIKANLHHLRTVLSRCVMECEGLETLCIKDQALTNENAEKIIGWALSHHLMQNPEADSNSKLVLSCESIQHGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKETERIIVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILRVILAKEDLSPDVDLDAVANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAALSEGRPPPALSGSADIRSLNMEDFKDAHERVCASVSSESVNMTELVQWNELYGEGGSRRKKALSYFMRRASQNFGHAPTAFVLFLIPSLPPQRKSIEIFSP 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00340 1237 CDD FHA 132 230 - -
Accr8g00340 1237 Gene3D - 1071 1165 - -
Accr8g00340 1237 Pfam AAA+ lid domain 1092 1127 IPR041569 -
Accr8g00340 1237 MobiDBLite consensus disorder prediction 1 81 - -
Accr8g00340 1237 CDD RecA-like_ATAD1 902 1068 - -
Accr8g00340 1237 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 897 1073 - -
Accr8g00340 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 898 1178 IPR027417 -
Accr8g00340 1237 Gene3D - 129 238 - -
Accr8g00340 1237 SUPERFAMILY SMAD/FHA domain 110 225 IPR008984 GO:0005515
Accr8g00340 1237 ProSitePatterns AAA-protein family signature. 1042 1061 IPR003960 GO:0005524|GO:0016887
Accr8g00340 1237 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 377 1202 - -
Accr8g00340 1237 MobiDBLite consensus disorder prediction 285 346 - -
Accr8g00340 1237 MobiDBLite consensus disorder prediction 297 311 - -
Accr8g00340 1237 MobiDBLite consensus disorder prediction 1 26 - -
Accr8g00340 1237 Coils Coil 859 879 - -
Accr8g00340 1237 Pfam ATPase family associated with various cellular activities (AAA) 939 1068 IPR003959 GO:0005524|GO:0016887
Accr8g00340 1237 MobiDBLite consensus disorder prediction 506 547 - -
Accr8g00340 1237 MobiDBLite consensus disorder prediction 328 346 - -
Accr8g00340 1237 Pfam FHA domain 151 220 IPR000253 GO:0005515
Accr8g00340 1237 SMART AAA_5 935 1072 IPR003593 GO:0016887
Accr8g00340 1237 Gene3D - 897 1178 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00340 Accr-Chr8 4853156 4866793 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00340 898 1150 Calmodulin-binding Proteins AT3G56690 39.615 2.10e-41 164