Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00313 ATGACAAAAAAGTGTGTGGGCTCTGCCCAGAAGCGTCCTTCGATTCACGGAAAGAAGACATCGTCAAATGTACCTTCTTCCTTCTTCAAGGTCATGATTGGCAGCGATTTTTCTAGCGTTTTGTATCTGCCTCCTAAGTTTGGTCCTACAGCGTCAACCTTGATTGACAAAGAAGCCATTATTGAGGATTCTAGTGGAAAGCAATGGACGGTACAAATATCAATTGTCGACAAGTCTTATGCTTTTCAGGAGGGATGGAAAGCTTTTTCTATGGAACATGGGCTTGAAGTTGGACATTTTTTGGTGTTCCATTACATGGGAAGATCTCACTTTGTTGTCAAGGTTTTTGATAGATCTGGTTGTGAAAAAACTGATTTTCCCAATCAGAGAAAGCAGAAGAAGAGAAAAACGATCACAGTTGACCTTGATGATAGCGATGAATTGTTAAATAGACAAGGTTTCTTATCCTCGGAGTCAGACACGGGAAAGACGCAAAGTCAGGACGAGGTTGTTGGAGTGAAAGACAGTGCAGAAATTAACGAAGAGAAAACCTCAGAAAATAGTAATAGTAACAGAAGGATCCGATCTTTGAACGAAGACAAAAACTATGAAGATCCTTGTTACTTGAAAGACCGAGACTTTGGAGACAGAGAAAGAGAGGACAGGGATAGTCTTATGTTTGATGCGTTCAGGTGTGAAATATTGAACAATTCAGGTGTTCACAGGACTGGCAAATTTACAAGCAGCAATGAAATAGTTGTTACAAGTATCTATACCAACGATCCTCTGCTTGAAGATATGATGAGAAATGGAGCAACTCAAGATCTGTTTGAAGTTGAATTGACCAAAAGAAGTCATTTTCTTGAAGAGTTAGACATGAGTACATTCTCCTGTGAGAGACATTCTCGTGAAAACAAGATTCCTGAGCATCTTCTGATCCCATGTACCATGCAACATGAAGAAATCAAAGAGAACTCAGGTAACAAAGAGTTAGACAAGAGTACATTCTCCTGTGAGAGACATTCTCGTGAAAACAAGATTCCTAAGCATCTTTTGATCCCATGTACCATGCAACATGAAGAAATCAAAGAGAACTCAGGTAACAAAGAATTAGACAAGAGTACATTCTCCTGTGAGAGACATTCTCGTGAAAACAAGATTCCTGAGCATCTTTTGATCCCATGTACCATGCAACATGAGGAAATCAAAGAGAACTCAGAGACTCAGCAATTATTGATATCAAAAGAGGGATATCCTTTGCATGCTGGCAATTGTGAAAATACCAGAGAGATGTTTGTCGGGTTACATGTATCCCTGGACGTTCCCATGTGCCATGCTACAGGGAAAATGGAGAGAATGATTCAAAAAGAGCTTCTGGACATGACTCCAGATGTGTGCATATACAATGATCAACTCCAGACACTTATTGGAGATCAAAGCAGCGATCTAAATTCAGTGAAAGCTGTACCTTCTGACTGTGGAGCTGCCCACATGCTTGCATCCATCTCAGAGACAGACAGTAAAAACAAGGCGGCTGGTGGCGCTCCGGAGGAGACAATGGCCGATCCTTTACCGTGA 1578 0.41 MTKKCVGSAQKRPSIHGKKTSSNVPSSFFKVMIGSDFSSVLYLPPKFGPTASTLIDKEAIIEDSSGKQWTVQISIVDKSYAFQEGWKAFSMEHGLEVGHFLVFHYMGRSHFVVKVFDRSGCEKTDFPNQRKQKKRKTITVDLDDSDELLNRQGFLSSESDTGKTQSQDEVVGVKDSAEINEEKTSENSNSNRRIRSLNEDKNYEDPCYLKDRDFGDREREDRDSLMFDAFRCEILNNSGVHRTGKFTSSNEIVVTSIYTNDPLLEDMMRNGATQDLFEVELTKRSHFLEELDMSTFSCERHSRENKIPEHLLIPCTMQHEEIKENSGNKELDKSTFSCERHSRENKIPKHLLIPCTMQHEEIKENSGNKELDKSTFSCERHSRENKIPEHLLIPCTMQHEEIKENSETQQLLISKEGYPLHAGNCENTREMFVGLHVSLDVPMCHATGKMERMIQKELLDMTPDVCIYNDQLQTLIGDQSSDLNSVKAVPSDCGAAHMLASISETDSKNKAAGGAPEETMADPLP 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00313 525 SUPERFAMILY DNA-binding pseudobarrel domain 26 121 IPR015300 -
Accr8g00313 525 PANTHER B3 DOMAIN-CONTAINING 22 202 - -
Accr8g00313 525 MobiDBLite consensus disorder prediction 178 197 - -
Accr8g00313 525 Coils Coil 180 200 - -
Accr8g00313 525 Gene3D - 20 121 IPR015300 -
Accr8g00313 525 MobiDBLite consensus disorder prediction 1 22 - -
Accr8g00313 525 MobiDBLite consensus disorder prediction 504 525 - -
Accr8g00313 525 ProSiteProfiles B3 DNA-binding domain profile. 26 119 IPR003340 GO:0003677
Accr8g00313 525 Pfam B3 DNA binding domain 28 118 IPR003340 GO:0003677
Accr8g00313 525 SMART B3_2 28 119 IPR003340 GO:0003677
Accr8g00313 525 CDD B3_DNA 27 117 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00313 Accr-Chr8 4503449 4506732 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00313 28 123 B3 DNA Binding Superfamily AT5G66980 37.000 3.04e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr8g00313 B3 1.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00313 - - pcin:129308262 506.523