Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00310 ATGGAGTCTTCTGAACCAGAATCAACTGCAATTTCGAATTCTAACGAGAAGCCTGACTTAGGCTTTCGCTCGGTCTCATCTTTCCCAAGTTCTGATCACGCTACGGAAACCTCAGATCTTAGTCATCAAGCTGAGCTCGATGCGCTTCATGAGGAGTTTCAGAAGAAGCTGATTTTGAAGGATAAGGATGAAGAGGCAGAGACTGTGAACAAAGATGATAAGGGTGATGGTAGTGAGGAAGTGAGTGATAAAGTCGTTGCTGAGGAATCTTATGAGGTAGATGGTTGGGGTGAATATGACGATAATTGGAATGAAAATGAGGACAATAATTGGACTACGAATGTGAGCGGGAATAAGAATGATGAGGAAGGTGGAGCTTATGATCAAGCTGTCCATGAAGCAGAGAGAAGGGAACAAACAAGCGGTGGTAGCAACCATCAATACCCGGTGAGGCCCGAAGCAGAAGATTGTGCATTCTATCTGAAAACTGGCACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCTGTTAATAGGAGGAAAAATCAGTATTATCTATCATCAGGAGGATGTAAGTTTGGAAAGGCTTGTAAATATAACCATTCAAGAGGAAAGTGTTTAGTAGGTCCAGTTCTAGAGGTTAATTTTCTTGGTCTACCTATTCGTCTGGGGGAGAAAGAGTGCCCTTATTTCATGCGTACTGGCTCTTGTAAGTTTGGAACAAACTGCAAATTTAATCATCCAGATCCAACAGTTGTTGCAGGAGGCGATCTTCCTGCAACATACGGTAATGGTGGGTCTATATCATTACATGGTATCTCACAGCCATCTGCACCCTCCTGGTCTTCTACAAGAACATTAAATGAAACTGCTGCTTTTATGCCAATGATGTTGTCACCTGCTCAAGGCGTTCCTCCTCAAAGTTCCGAATGGAATGTGTATCAGGCACCTGTCTACCTACCTGAGGGGAGCATGCGCCCACCTTCTGCATATATTATGAACAACCCAGCTATTGAGAAAAATATTTATATGCAACATCAAAAGAAGATGCAGGTTGAAGAGTTTCCTGAGAGGCCTGGGGAGCCTGAATGCAGTTATTTCTTAAAAACTGGGGATTGCAAGTACAAATCTAATTGTAAATTTCACCATCCAAGGAATCGGCTTACAAAGTTAGCCTCTGCTACATGCATCCTCAGTGACAAGGGTCTTCCTTTGAGGCCTGACCAGAATGTATGCACACATTACAGTCGCTACGGTATCTGCAAATTTGGACCCGCATGTAAGTTTGACCACCCAAAAAACCAATCGTTCTCTTTAGGGCCTTCCCTTGATCTGCAATCTCCCTACTCAAACTCTGCTAGAGTTGAAGTTGCTGAAAATGGAGGGGGCAATTGA 1398 0.4313 MESSEPESTAISNSNEKPDLGFRSVSSFPSSDHATETSDLSHQAELDALHEEFQKKLILKDKDEEAETVNKDDKGDGSEEVSDKVVAEESYEVDGWGEYDDNWNENEDNNWTTNVSGNKNDEEGGAYDQAVHEAERREQTSGGSNHQYPVRPEAEDCAFYLKTGTCKFGFNCKFNHPVNRRKNQYYLSSGGCKFGKACKYNHSRGKCLVGPVLEVNFLGLPIRLGEKECPYFMRTGSCKFGTNCKFNHPDPTVVAGGDLPATYGNGGSISLHGISQPSAPSWSSTRTLNETAAFMPMMLSPAQGVPPQSSEWNVYQAPVYLPEGSMRPPSAYIMNNPAIEKNIYMQHQKKMQVEEFPERPGEPECSYFLKTGDCKYKSNCKFHHPRNRLTKLASATCILSDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPKNQSFSLGPSLDLQSPYSNSARVEVAENGGGN 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00310 465 MobiDBLite consensus disorder prediction 1 37 - -
Accr8g00310 465 ProSiteProfiles Zinc finger C3H1-type profile. 223 251 IPR000571 GO:0046872
Accr8g00310 465 SUPERFAMILY CCCH zinc finger 150 181 IPR036855 GO:0046872
Accr8g00310 465 PANTHER PROTEIN PHOSPHATASE RELATED 44 454 - -
Accr8g00310 465 Pfam RNA-binding, Nab2-type zinc finger 185 202 - -
Accr8g00310 465 Gene3D - 184 256 - -
Accr8g00310 465 MobiDBLite consensus disorder prediction 38 91 - -
Accr8g00310 465 ProSiteProfiles Zinc finger C3H1-type profile. 407 435 IPR000571 GO:0046872
Accr8g00310 465 MobiDBLite consensus disorder prediction 106 120 - -
Accr8g00310 465 Gene3D - 119 183 - -
Accr8g00310 465 ProSiteProfiles Zinc finger C3H1-type profile. 359 387 IPR000571 GO:0046872
Accr8g00310 465 SUPERFAMILY CCCH zinc finger 364 389 IPR036855 GO:0046872
Accr8g00310 465 SUPERFAMILY CCCH zinc finger 405 432 IPR036855 GO:0046872
Accr8g00310 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 226 249 IPR000571 GO:0046872
Accr8g00310 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 361 386 IPR000571 GO:0046872
Accr8g00310 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 177 IPR000571 GO:0046872
Accr8g00310 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 410 434 IPR000571 GO:0046872
Accr8g00310 465 Gene3D - 346 439 - -
Accr8g00310 465 SUPERFAMILY CCCH zinc finger 224 251 IPR036855 GO:0046872
Accr8g00310 465 MobiDBLite consensus disorder prediction 1 124 - -
Accr8g00310 465 SMART c3hfinal6 359 386 IPR000571 GO:0046872
Accr8g00310 465 SMART c3hfinal6 407 434 IPR000571 GO:0046872
Accr8g00310 465 SMART c3hfinal6 182 204 IPR000571 GO:0046872
Accr8g00310 465 SMART c3hfinal6 151 178 IPR000571 GO:0046872
Accr8g00310 465 SMART c3hfinal6 223 250 IPR000571 GO:0046872
Accr8g00310 465 ProSiteProfiles Zinc finger C3H1-type profile. 184 205 IPR000571 GO:0046872
Accr8g00310 465 ProSiteProfiles Zinc finger C3H1-type profile. 151 179 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00310 Accr-Chr8 4417777 4420951 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00310 345 437 C2H2 Transcription Factor Family AT3G02830 43.011 1.40e-19 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr8g00310 zf-CCCH 2.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00310 - - qsa:O6P43_030782 550.051