Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00309 ATGGAGTCTTCTGAACCAGAATCAACTGCAATTTCGAATTCTAACGAGAAGCCTGACTTAGGCTTTCGCTCGGTCTCATCTTTCCCAAGTTCTGATCACGCTACGGAAACCTCAGATCTTAGTCATCAAGCTGAGCTCGATGCGCTTCATGAGGAGTTTCAGAAGAAGCTGATTTTGAAGGATAAGGATGAAGAGGCAGAGACTGTGAACAAAGATGATAAGGGTGATGGTAGTGAGGAAGTGAGTGATAAAGTCGTTGCTGAGGAATCTTATGAGGTAGATGGTTGGGGTGAATATGACGATAATTGGAATGAAAATGAGGACAATAATTGGACTACGAATGTGAGCGGGAATAAGAATGATGAGGAAGGTGGAGCTTATGATCAAGCTGTCCATGAAGCAGAGAGAAGGGAACAAACAAGCGGTGGTAGCAACCATCAATACCCGGTGAGGCCCGAAGCAGAAGATTGTGCATTCTATCTGAAAACTGGCACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCTGTTAATAGGAGGAAAAATCAGGCTGGTAGAGAGAAGGTGGGAGAGAGAGAAGAATCAGCAGATAAATCAGTGCAGGCAGAATGCAAGGGGGAGAAAGAGTGCCCTTATTTCATGCGTACTGGCTCTTGTAAGTTTGGAACAAACTGCAAATTTAATCATCCAGATCCAACAGTTGTTGCAGGAGGCGATCTTCCTGCAACATACGGTAATGGTGGGTCTATATCATTACATGGTATCTCACAGCCATCTGCACCCTCCTGGTCTTCTACAAGAACATTAAATGAAACTGCTGCTTTTATGCCAATGATGTTGTCACCTGCTCAAGGCGTTCCTCCTCAAAGTTCCGAATGGAATGTGTATCAGGCACCTGTCTACCTACCTGAGGGGAGCATGCGCCCACCTTCTGCATATATTATGAACAACCCAGCTATTGAGAAAAATATTTATATGCAACATCAAAAGAAGATGCAGGTTGAAGAGTTTCCTGAGAGGCCTGGGGAGCCTGAATGCAGTTATTTCTTAAAAACTGGGGATTGCAAGTACAAATCTAATTGTAAATTTCACCATCCAAGGAATCGGCTTACAAAGTTAGCCTCTGCTACATGCATCCTCAGTGACAAGGGTCTTCCTTTGAGGCCTGACCAGAATGTATGCACACATTACAGTCGCTACGGTATCTGCAAATTTGGACCCGCATGTAAGTTTGACCACCCAAAAAACCAATCGTTCTCTTTAGGGCCTTCCCTTGATCTGCAATCTCCCTACTCAAACTCTGCTAGAGTTGAAGTTGCTGAAAATGGAGGGGGCAATTGA 1344 0.4405 MESSEPESTAISNSNEKPDLGFRSVSSFPSSDHATETSDLSHQAELDALHEEFQKKLILKDKDEEAETVNKDDKGDGSEEVSDKVVAEESYEVDGWGEYDDNWNENEDNNWTTNVSGNKNDEEGGAYDQAVHEAERREQTSGGSNHQYPVRPEAEDCAFYLKTGTCKFGFNCKFNHPVNRRKNQAGREKVGEREESADKSVQAECKGEKECPYFMRTGSCKFGTNCKFNHPDPTVVAGGDLPATYGNGGSISLHGISQPSAPSWSSTRTLNETAAFMPMMLSPAQGVPPQSSEWNVYQAPVYLPEGSMRPPSAYIMNNPAIEKNIYMQHQKKMQVEEFPERPGEPECSYFLKTGDCKYKSNCKFHHPRNRLTKLASATCILSDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPKNQSFSLGPSLDLQSPYSNSARVEVAENGGGN 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00309 447 MobiDBLite consensus disorder prediction 1 37 - -
Accr8g00309 447 ProSiteProfiles Zinc finger C3H1-type profile. 206 233 IPR000571 GO:0046872
Accr8g00309 447 SUPERFAMILY CCCH zinc finger 208 233 IPR036855 GO:0046872
Accr8g00309 447 MobiDBLite consensus disorder prediction 38 91 - -
Accr8g00309 447 ProSiteProfiles Zinc finger C3H1-type profile. 341 369 IPR000571 GO:0046872
Accr8g00309 447 SMART c3hfinal6 341 368 IPR000571 GO:0046872
Accr8g00309 447 SMART c3hfinal6 151 178 IPR000571 GO:0046872
Accr8g00309 447 SMART c3hfinal6 389 416 IPR000571 GO:0046872
Accr8g00309 447 SMART c3hfinal6 207 232 IPR000571 GO:0046872
Accr8g00309 447 MobiDBLite consensus disorder prediction 106 120 - -
Accr8g00309 447 Gene3D - 328 421 - -
Accr8g00309 447 SUPERFAMILY CCCH zinc finger 346 371 IPR036855 GO:0046872
Accr8g00309 447 Gene3D - 119 184 - -
Accr8g00309 447 Gene3D - 185 241 - -
Accr8g00309 447 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 177 IPR000571 GO:0046872
Accr8g00309 447 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 207 231 IPR000571 GO:0046872
Accr8g00309 447 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 343 368 IPR000571 GO:0046872
Accr8g00309 447 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 392 416 IPR000571 GO:0046872
Accr8g00309 447 SUPERFAMILY CCCH zinc finger 387 414 IPR036855 GO:0046872
Accr8g00309 447 ProSiteProfiles Zinc finger C3H1-type profile. 389 417 IPR000571 GO:0046872
Accr8g00309 447 PANTHER PROTEIN PHOSPHATASE RELATED 44 206 - -
Accr8g00309 447 MobiDBLite consensus disorder prediction 1 124 - -
Accr8g00309 447 SUPERFAMILY CCCH zinc finger 150 180 IPR036855 GO:0046872
Accr8g00309 447 ProSiteProfiles Zinc finger C3H1-type profile. 151 179 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00309 Accr-Chr8 4417777 4420951 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00309 327 419 C2H2 Transcription Factor Family AT3G02830 43.011 1.06e-19 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr8g00309 zf-CCCH 2.2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00309 - - qsa:O6P43_030782 449.899