Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00308 ATGGAGTCTTCTGAACCAGAATCAACTGCAATTTCGAATTCTAACGAGAAGCCTGACTTAGGCTTTCGCTCGGTCTCATCTTTCCCAAGTTCTGATCACGCTACGGAAACCTCAGATCTTAGTCATCAAGCTGAGCTCGATGCGCTTCATGAGGAGTTTCAGAAGAAGCTGATTTTGAAGGATAAGGATGAAGAGGCAGAGACTGTGAACAAAGATGATAAGGGTGATGGTAGTGAGGAAGTGAGTGATAAAGTCGTTGCTGAGGAATCTTATGAGGTAGATGGTTGGGGTGAATATGACGATAATTGGAATGAAAATGAGGACAATAATTGGACTACGAATGTGAGCGGGAATAAGAATGATGAGGAAGGTGGAGCTTATGATCAAGCTGTCCATGAAGCAGAGAGAAGGGAACAAACAAGCGGTGGTAGCAACCATCAATACCCGGTGAGGCCCGAAGCAGAAGATTGTGCATTCTATCTGAAAACTGGCACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCTGTTAATAGGAGGAAAAATCAGGCTGGTAGAGAGAAGGTGGGAGAGAGAGAAGAATCAGCAGATAAATCAGTGCAGGCAGAATGCAAGTATTATCTATCATCAGGAGGATGTAAGTTTGGAAAGGCTTGTAAATATAACCATTCAAGAGGAAAGTGTTTAGTAGGTCCAGTTCTAGAGGTTAATTTTCTTGGTCTACCTATTCGTCTGGGGGAGAAAGAGTGCCCTTATTTCATGCGTACTGGCTCTTGTAAGTTTGGAACAAACTGCAAATTTAATCATCCAGATCCAACAGTTGTTGCAGGAGGCGATCTTCCTGCAACATACGGTAATGGTGGGTCTATATCATTACATGGTATCTCACAGCCATCTGCACCCTCCTGGTCTTCTACAAGAACATTAAATGAAACTGCTGCTTTTATGCCAATGATGTTGTCACCTGCTCAAGGCGTTCCTCCTCAAAGTTCCGAATGGAATGTGTATCAGGCACCTGTCTACCTACCTGAGGGGAGCATGCGCCCACCTTCTGCATATATTATGAACAACCCAGCTATTGAGAAAAATATTTATATGCAACATCAAAAGAAGATGCAGGTTGAAGAGTTTCCTGAGAGGCCTGGGGAGCCTGAATGCAGTTATTTCTTAAAAACTGGGGATTGCAAGTACAAATCTAATTGTAAATTTCACCATCCAAGGAATCGGCTTACAAAGTTAGCCTCTGCTACATGCATCCTCAGTGACAAGGGTCTTCCTTTGAGGCCTGACCAGAATGTATGCACACATTACAGTCGCTACGGTATCTGCAAATTTGGACCCGCATGTAAGTTTGACCACCCAAAAAACCAATCGTTCTCTTTAGGGCCTTCCCTTGATCTGCAATCTCCCTACTCAAACTCTGCTAGAGTTGAAGTTGCTGAAAATGGAGGGGGCAATTGA 1464 0.4337 MESSEPESTAISNSNEKPDLGFRSVSSFPSSDHATETSDLSHQAELDALHEEFQKKLILKDKDEEAETVNKDDKGDGSEEVSDKVVAEESYEVDGWGEYDDNWNENEDNNWTTNVSGNKNDEEGGAYDQAVHEAERREQTSGGSNHQYPVRPEAEDCAFYLKTGTCKFGFNCKFNHPVNRRKNQAGREKVGEREESADKSVQAECKYYLSSGGCKFGKACKYNHSRGKCLVGPVLEVNFLGLPIRLGEKECPYFMRTGSCKFGTNCKFNHPDPTVVAGGDLPATYGNGGSISLHGISQPSAPSWSSTRTLNETAAFMPMMLSPAQGVPPQSSEWNVYQAPVYLPEGSMRPPSAYIMNNPAIEKNIYMQHQKKMQVEEFPERPGEPECSYFLKTGDCKYKSNCKFHHPRNRLTKLASATCILSDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPKNQSFSLGPSLDLQSPYSNSARVEVAENGGGN 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00308 487 PANTHER PROTEIN PHOSPHATASE RELATED 45 476 - -
Accr8g00308 487 MobiDBLite consensus disorder prediction 1 37 - -
Accr8g00308 487 ProSiteProfiles Zinc finger C3H1-type profile. 429 457 IPR000571 GO:0046872
Accr8g00308 487 ProSiteProfiles Zinc finger C3H1-type profile. 245 273 IPR000571 GO:0046872
Accr8g00308 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 248 271 IPR000571 GO:0046872
Accr8g00308 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 432 456 IPR000571 GO:0046872
Accr8g00308 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 177 IPR000571 GO:0046872
Accr8g00308 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 203 226 IPR000571 GO:0046872
Accr8g00308 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 383 408 IPR000571 GO:0046872
Accr8g00308 487 SUPERFAMILY CCCH zinc finger 204 228 IPR036855 GO:0046872
Accr8g00308 487 SUPERFAMILY CCCH zinc finger 427 454 IPR036855 GO:0046872
Accr8g00308 487 MobiDBLite consensus disorder prediction 38 91 - -
Accr8g00308 487 Gene3D - 189 275 - -
Accr8g00308 487 Gene3D - 368 460 - -
Accr8g00308 487 ProSiteProfiles Zinc finger C3H1-type profile. 199 227 IPR000571 GO:0046872
Accr8g00308 487 MobiDBLite consensus disorder prediction 106 120 - -
Accr8g00308 487 SUPERFAMILY CCCH zinc finger 150 180 IPR036855 GO:0046872
Accr8g00308 487 Gene3D - 117 188 - -
Accr8g00308 487 SUPERFAMILY CCCH zinc finger 246 273 IPR036855 GO:0046872
Accr8g00308 487 SMART c3hfinal6 381 408 IPR000571 GO:0046872
Accr8g00308 487 SMART c3hfinal6 199 226 IPR000571 GO:0046872
Accr8g00308 487 SMART c3hfinal6 429 456 IPR000571 GO:0046872
Accr8g00308 487 SMART c3hfinal6 151 178 IPR000571 GO:0046872
Accr8g00308 487 SMART c3hfinal6 245 272 IPR000571 GO:0046872
Accr8g00308 487 MobiDBLite consensus disorder prediction 1 124 - -
Accr8g00308 487 SUPERFAMILY CCCH zinc finger 386 411 IPR036855 GO:0046872
Accr8g00308 487 ProSiteProfiles Zinc finger C3H1-type profile. 381 409 IPR000571 GO:0046872
Accr8g00308 487 ProSiteProfiles Zinc finger C3H1-type profile. 151 179 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00308 Accr-Chr8 4417777 4420951 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00308 367 459 C2H2 Transcription Factor Family AT3G02830 43.011 1.61e-19 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr8g00308 zf-CCCH 2.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00308 - - gmx:100786894 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00308 8 4417777 4420951 Accr8g00308 8 4417777 4420951 ECH