Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00303 ATGGTGGGTTCGGCAGCTCTGGCACCAGAGACAAACTCAGAGGTATTTTCATGGCTAAAATCTCTTCCTCTTGCCCCAGAGTACCGCCCTAGCTTGGCTGAGTTTCAAGATCCGATTTCATACATTTTTAAGATCGAGAAGGAAGCTTCCAAGTATGGAATCTGCAAAATTGTTCCCCCCGTGCCACCTTGTTCGAAGAAGACAGCAATTGCGAATCTTAACCGCTCGTTGGCTGCACGAGCTGCCTCCTCTGACTCTTCTAATTCGAAATCCCAGCCTGCATTCACCACAAGGCAGCAGCAGATCGGGTTCTGCCCTCGGAAGCAACGGCCAGCGCAGCGTCCTGTGTGGAAGAGTGGGGAATACTACACGTTTCAGGAATTTGAAGCGAAGGCCAAGGCTTTTGAGAAGAATTACCTCAAGAAATGGGCCAAGAAAGGCGGTCTTTCACCTCTGGAGATAGAAACACTTTATTGGAAGGCGACAGTGGACAAACCCTTTTCGGTGGAGTACGCAAATGATATGCCTGGTTCGGCTTTTGTTCCCGTGAATGGGAGAAAATATAGAGAGGCAGGGGAGGGAACGACTCTTGGTGAGACTGCATGGAACATGAGGTTGGTGTCACGGGCAAATGGTTCTCTGTTGAAGTTTATGAAGGAGGAGATTCCTGGTGTTACATCACCAATGGTGTACGTAGCTATGCTGTTCAGCTGGTTTGCTTGGCATGCAGAGGATCATGACCTGCATAGTTTGAATTACCTTCATATGGGGGCAGGCAAGACTTGGTATGGCGTGCCGCGGGATGCCGCTGTAGCATTTGAGGAAGTGGTCAGAATTCATGGTTATGGGGGAGAAATAAATCCTCTTGTTACTTTTGCTGTACTTGGGGAGAAAACCACAGTGATGTCGCCTGAAGTGTTTATTAGTGCAGGGGTTCCTTGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTCACATTTCCAAGAGCTTATCACACTGGATTTAGTCATGGATTTAATTGTGGGGAGGCAGCAAACATTGCGACACCTGAATGGTTGAGGGTTGCTAAAGATGCTGCTATTAGGAGGGCCTCAATAAATTATCCGCCCATGGTTTCACATTTTCAGTTACTTTATGATCTTGCCCTGGCTTTGTGTTCAAGAATTCCTGGGGGCATCAGTGCTGAACCACGGAGTTCTCGGCTTAGAGATAAGAGGAAAAGTGAAGGGGAAACTGTTATTAAAGAACTATTTGTCCAGGATGTATTACAGAACAATAACTTGCTTCATGGTCTTGGCAAAGGATCTGCTATGGTACTTCTTCCTCGGAGCTCTTCAGATATTTCTGTTTGCTCCAAATTACGTGTTGGTTCCCAGCAGCTGAAGGGGAATCCTGAGTATTCTCTCAGAGAATGCAGTTCTGAGGGAATGAATTCCTCAAAAGGTTTTGTTTCTGATGACCTGGTTTTCAGCAGAACCACACAAGTGAAGGGATTTTCAGTAAAAGAGAAGTTTGCTTCGTTGTGTGAAAGGAACAGGGTCTCCTCATTAAGTGTAAATGATAACACATGCTCTTCAAGTTCTCTGCCACCTCAAAGAGACACTGAAAGGGAGACAAGCCAAGGGGATGGGTTGTCAGACCAGAGACTATTTTCATGTGTTACTTGTGGTATACTAAGCTTTGCTTGTGTTGCTATTGTGCAGCCTAAGGAACCAGCTGCTAGGTACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTAAGCATCAATAAGTATACACATGCCCATGGTGATGCAACTACTGCGAAAAGCACCTTTGCAGGATGGAAGGTCAAAAAAGCCCCAGACTATGATCTTCCTGTTCAATCTGGAGGATACCAGATACAGGTGGAAGATCAATCACATGAGGTAGCTTTACGTACTAGAGGACAGAAAGAAACATCAGCCCTTGGCTTATTGGCATCAGCATATGGAAATTCATCTGATTCAGAGGAAGATCAAGTTGACCCAGGTATTGCAGTTCATGATAATGAATCTAATGGTATGGACCATCCATCAGGTGGTATATCTGAGAATATGTCTAGCTTGCCTTCTCTTTTCCAAGATTTCAATGCAAGTGCAGTCAAATTTCATGGTGATTATGGGCAAAAAGCAAACTCAGAAGGTTGTGATAACACTTCAGGGACTGCATTTAAGAATACGAGTTGTACCTTAAATTATTCTCAAGATGTTCGTGAGGCTGAAACATCAATGCTTTGTAACACTGGATGTTCCATTGAGGATAGAAGTGCTTCATCGTTGCCACATTCTGATGAAGATTCATCTAGATTGCATGTCTTCTGTCTGGAGCATGCTGCTGAAGTGGAGCAGCGACTTCAGCCAATAGGAGGAGCACACATATTACTCCTTTGTCATCCAGATTATCCCAAGGTAGAGGCTGAAGCAAAAAATGTGGCAGAAGAACTGGGTATTGGTGGCATATGGAAGAATCTTGCTTACAGAAATGCCACCCCAGAAGATGAGGAGAGGATCCAGTCGGCTCTGGATAGTGAGGAAGCTATTCCCGGAAATGCGGACTGGGCTGTAAAGCTGGGAATCAATCTCTTCTATAGTGCCAATCTTAGCCGCTCTCCTCTCTACAGTAAGCAGATGCCTTATAATTCTGTCATATATCATGCATTTGGCCGTAGTGCTCCAGCAAGGTCACCCACAGAACCCAAGGTTTATCAAAGAAGGACCAGCAAACAGAAAAAGGTGGTTGCTGGAAAATGGTGTGGCAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCTAAAAGAGATTCTGAGGATGATGATGAGAAAGTCTTACATGGTTGGTCATCGCCTGACCAGAAAATTGAGAGATCAGAAAGTGCTCCCACAGACAATTTTACTAATAGAAAATCTGCTAAGAAAAGGAAAATGACTGTAGAGAGTAGAAAAGCCGGGAAAGCCAGTTTTGCTGAGAGAGAATATGATTCCGATAATTCTATTGAAAAGAAATACAACCCACAGCAAAGGACATATTCTAGAACCAAACAAGCCAAATATTTTGACAGAGATGATGCAGCATCAGAGGAGGATTATTCTCCTGTGCAGCGATATGGAAAACCTACAGCAACGCAAGCCAAATACACTGAAAGTGATGAAGTGTCAGATGATTCAATTGATGATAATTCTCACATGCAGCAGGGAAGGAATTTTAAAATCAAAGAACCTAAATTCATTGACAGTGATGTCGTCTCAGATGATGCAATGGGATATGATTCTGATTCACAACTGAGGAGAGAGCTTAGCAATAAACAAATTGAAGATTCAGAAAGAGATGAAGTTTCAGAGGATTCCATGTGTGGTAGCTTTCTTAAACGGCGGAGGAAGACTTGTAAAAGCAAGCCAGCCAAATATGTTGCTAAAGATGCAATATCTGATGACCAAATGGAGGATCATTTTCAGAAGCAGCGAAGAAGGATTCCTAAAAGCAGACAAGATAGATACCTTGATGGAGAAGATATCATGGTATCTGATGACCAACTGGAGCATCGAATACATAAGCAGCAACGATCTAAAGGAAGACGGGCCAAACATTTCACTGGAGATGATATTACATCTGATGACCAACTGGAGGACCGTTCTGGCAAGTTTCATAGAAGGATTCCTAAAAGCAGACAAGATAAATGCCCAGTCAAGGAAGATGTGATATCTGATGACCAATTGGAGGATCACTTTCAGAAGCCACGTGGTACTATTCCAAAGAGCAGGCAAAATAAACGCAAGAATAAAATTATGGCCGACTCGTCTGATAACTATGCTCATCTGCTGCATAGAACTCCCAAGAGGAAGCAAGTTAAAAGCATGGATGAAGAAGACATAAATTCTGATGATCAAATGGAGGATTCATCTCTTCAGCAGCGAAGGAGGACTCTTCGAAGCCAGCAATCTAAATTAGAGGCACAGCAAAAAATGAAACAATCTAACTCTTGCCGTGTGAAACAGACATCCCGACCTCTAAAACGAAGCACTCAGCTGCAAGTAAAATCAAAGACTTCTCAGAAAATGAAGCAGCCTCTGCGAGGTCAGAAAAACCAACCTGATAAATTTAGAGATTTTAGCATGTGTTCGGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGAAAGAGAGTACCAAAAGTTGAGGAGTCTGAAGCAAAACCGAAAGGAAAGGTAATCCAAAGGAAGAAGGTGAACAATGCTACAGCTTTGAAGGTTTCCAAAACGAAGGATGAGGAAGCAGAATACGAGTGTGACATTGATGGGTGCACAATGAGTTTCAGCTCAAAACAGGAGTTAACAGTGCACAAGAGAAACATTTGTCCTGTAAAGGGATGCGGAAAGAAATTTTTCTCACATAAATATCTGGTGCAGCATCGTCGAGTTCATGAGGATGACCGCCCTCTGAGGTGCCCTTGGAAGGGCTGCAAGATGACCTTCAAGTGGGCATGGGCACGTACTGAGCATATTCGAGTGCATACCGGAGCTCGTCCATATGTTTGTGCTGAGCCAGGGTGTGGGCAAACATTCAGATTTGTTTCTGATTTCAGTCGCCACAAGCGAAAGACTGGCCATTCAACAAAGAAGAGTCGTTAA 4677 0.4381 MVGSAALAPETNSEVFSWLKSLPLAPEYRPSLAEFQDPISYIFKIEKEASKYGICKIVPPVPPCSKKTAIANLNRSLAARAASSDSSNSKSQPAFTTRQQQIGFCPRKQRPAQRPVWKSGEYYTFQEFEAKAKAFEKNYLKKWAKKGGLSPLEIETLYWKATVDKPFSVEYANDMPGSAFVPVNGRKYREAGEGTTLGETAWNMRLVSRANGSLLKFMKEEIPGVTSPMVYVAMLFSWFAWHAEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRIHGYGGEINPLVTFAVLGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPGGISAEPRSSRLRDKRKSEGETVIKELFVQDVLQNNNLLHGLGKGSAMVLLPRSSSDISVCSKLRVGSQQLKGNPEYSLRECSSEGMNSSKGFVSDDLVFSRTTQVKGFSVKEKFASLCERNRVSSLSVNDNTCSSSSLPPQRDTERETSQGDGLSDQRLFSCVTCGILSFACVAIVQPKEPAARYLMSADCSFFNDWVVGSGVSINKYTHAHGDATTAKSTFAGWKVKKAPDYDLPVQSGGYQIQVEDQSHEVALRTRGQKETSALGLLASAYGNSSDSEEDQVDPGIAVHDNESNGMDHPSGGISENMSSLPSLFQDFNASAVKFHGDYGQKANSEGCDNTSGTAFKNTSCTLNYSQDVREAETSMLCNTGCSIEDRSASSLPHSDEDSSRLHVFCLEHAAEVEQRLQPIGGAHILLLCHPDYPKVEAEAKNVAEELGIGGIWKNLAYRNATPEDEERIQSALDSEEAIPGNADWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYHAFGRSAPARSPTEPKVYQRRTSKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDDDEKVLHGWSSPDQKIERSESAPTDNFTNRKSAKKRKMTVESRKAGKASFAEREYDSDNSIEKKYNPQQRTYSRTKQAKYFDRDDAASEEDYSPVQRYGKPTATQAKYTESDEVSDDSIDDNSHMQQGRNFKIKEPKFIDSDVVSDDAMGYDSDSQLRRELSNKQIEDSERDEVSEDSMCGSFLKRRRKTCKSKPAKYVAKDAISDDQMEDHFQKQRRRIPKSRQDRYLDGEDIMVSDDQLEHRIHKQQRSKGRRAKHFTGDDITSDDQLEDRSGKFHRRIPKSRQDKCPVKEDVISDDQLEDHFQKPRGTIPKSRQNKRKNKIMADSSDNYAHLLHRTPKRKQVKSMDEEDINSDDQMEDSSLQQRRRTLRSQQSKLEAQQKMKQSNSCRVKQTSRPLKRSTQLQVKSKTSQKMKQPLRGQKNQPDKFRDFSMCSEEEEEGGPSTRLRKRVPKVEESEAKPKGKVIQRKKVNNATALKVSKTKDEEAEYECDIDGCTMSFSSKQELTVHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKSR 1558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00303 1558 ProSiteProfiles Zinc finger C2H2 type domain profile. 1526 1557 IPR013087 -
Accr8g00303 1558 SUPERFAMILY beta-beta-alpha zinc fingers 1466 1502 IPR036236 -
Accr8g00303 1558 MobiDBLite consensus disorder prediction 948 973 - -
Accr8g00303 1558 MobiDBLite consensus disorder prediction 1287 1305 - -
Accr8g00303 1558 SMART c2h2final6 1526 1552 IPR013087 -
Accr8g00303 1558 SMART c2h2final6 1496 1520 IPR013087 -
Accr8g00303 1558 SMART c2h2final6 1466 1490 IPR013087 -
Accr8g00303 1558 SMART c2h2final6 1443 1465 IPR013087 -
Accr8g00303 1558 SMART JmjN_1 24 65 IPR003349 -
Accr8g00303 1558 ProSiteProfiles Zinc finger C2H2 type domain profile. 1496 1525 IPR013087 -
Accr8g00303 1558 MobiDBLite consensus disorder prediction 1162 1199 - -
Accr8g00303 1558 MobiDBLite consensus disorder prediction 519 545 - -
Accr8g00303 1558 Pfam JmjC domain, hydroxylase 229 347 IPR003347 -
Accr8g00303 1558 ProSitePatterns Zinc finger C2H2 type domain signature. 1528 1552 IPR013087 -
Accr8g00303 1558 SUPERFAMILY beta-beta-alpha zinc fingers 1506 1550 IPR036236 -
Accr8g00303 1558 ProSiteProfiles JmjN domain profile. 25 66 IPR003349 -
Accr8g00303 1558 MobiDBLite consensus disorder prediction 1063 1088 - -
Accr8g00303 1558 MobiDBLite consensus disorder prediction 519 536 - -
Accr8g00303 1558 MobiDBLite consensus disorder prediction 995 1016 - -
Accr8g00303 1558 MobiDBLite consensus disorder prediction 1162 1417 - -
Accr8g00303 1558 FunFam Probable lysine-specific demethylase ELF6 1523 1552 - -
Accr8g00303 1558 MobiDBLite consensus disorder prediction 666 698 - -
Accr8g00303 1558 Gene3D Classic Zinc Finger 1466 1550 - -
Accr8g00303 1558 ProSiteProfiles Zinc finger C2H2 type domain profile. 1466 1495 IPR013087 -
Accr8g00303 1558 MobiDBLite consensus disorder prediction 81 102 - -
Accr8g00303 1558 ProSitePatterns Zinc finger C2H2 type domain signature. 1468 1490 IPR013087 -
Accr8g00303 1558 SUPERFAMILY Clavaminate synthase-like 211 379 - -
Accr8g00303 1558 Gene3D Cupin 18 369 - -
Accr8g00303 1558 ProSiteProfiles JmjC domain profile. 199 365 IPR003347 -
Accr8g00303 1558 ProSitePatterns Zinc finger C2H2 type domain signature. 1498 1520 IPR013087 -
Accr8g00303 1558 MobiDBLite consensus disorder prediction 1374 1417 - -
Accr8g00303 1558 FunFam Probable lysine-specific demethylase ELF6 1493 1522 - -
Accr8g00303 1558 MobiDBLite consensus disorder prediction 1321 1373 - -
Accr8g00303 1558 MobiDBLite consensus disorder prediction 1208 1263 - -
Accr8g00303 1558 SMART cupin_9 196 365 IPR003347 -
Accr8g00303 1558 FunFam Probable lysine-specific demethylase ELF6 18 369 - -
Accr8g00303 1558 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1492 - -
Accr8g00303 1558 Pfam jmjN domain 26 59 IPR003349 -
Accr8g00303 1558 MobiDBLite consensus disorder prediction 1029 1044 - -
Accr8g00303 1558 Gene3D Classic Zinc Finger 1418 1465 - -
Accr8g00303 1558 MobiDBLite consensus disorder prediction 948 1088 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00303 Accr-Chr8 4268584 4278542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00303 1102 1557 C2H2 Transcription Factor Family AT3G48430 36.308 2.05e-73 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr8g00303 JmjC 5e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00303 - - gmx:100775813 1924.83