Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00297 ATGCAGGTTGAAGAGTTTCCTGAGAGGCCTGGGGAGCCTGAATGCAGTTATTTCTTAAAAACTAGGGGTTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCAAGGAATCGGCTTACAAAGTTAGCCTCTGCTACATGCATCCTCAGTGACAAGGGTCTTCCTTTGAGACCTGACCAGAATGTATGCACGCATTACAGTCGCTACGGTATCTGCAAATTTGGACCCGCATGTAAGTTTGACCACCCAATAAACCAATCGTTCTCTTTAGGGCCTTCCCTTGATCCGCAATCTCCCTACTCAAACTCTGCTAGAGTTGAAGTAGCTGAAAATGGAGGGGGCAATTGA 348 0.4511 MQVEEFPERPGEPECSYFLKTRGCKFKSNCKFHHPRNRLTKLASATCILSDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPINQSFSLGPSLDPQSPYSNSARVEVAENGGGN 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00297 115 SUPERFAMILY CCCH zinc finger 54 83 IPR036855 GO:0046872
Accr8g00297 115 Gene3D - 56 108 - -
Accr8g00297 115 Gene3D - 4 48 - -
Accr8g00297 115 ProSiteProfiles Zinc finger C3H1-type profile. 57 85 IPR000571 GO:0046872
Accr8g00297 115 SMART c3hfinal6 57 84 IPR000571 GO:0046872
Accr8g00297 115 SMART c3hfinal6 9 36 IPR000571 GO:0046872
Accr8g00297 115 PANTHER PROTEIN PHOSPHATASE RELATED 1 103 - -
Accr8g00297 115 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 60 83 IPR000571 GO:0046872
Accr8g00297 115 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 11 36 IPR000571 GO:0046872
Accr8g00297 115 ProSiteProfiles Zinc finger C3H1-type profile. 9 37 IPR000571 GO:0046872
Accr8g00297 115 SUPERFAMILY CCCH zinc finger 14 39 IPR036855 GO:0046872
Accr8g00297 115 MobiDBLite consensus disorder prediction 90 105 - -
Accr8g00297 115 MobiDBLite consensus disorder prediction 90 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00297 Accr-Chr8 4227948 4228394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00297 1 91 C2H2 Transcription Factor Family AT3G02830 45.055 1.44e-20 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr8g00297 zf-CCCH 2.5e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00297 - - gmx:100776363 174.481