Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00296 ATGCGCCCACCTTCTGCATATATTATGAACAACCCAGCTATTGAGAAAAATATTTATATGCAATATCAAAAGAAGATGCAGGTTGAAGAGTTTCCTGAGAGGCCTGGGGAGCCTGAATGCAGTTATTTCTTAAAAACTAGGGGTTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCAAGGAATCGGCTTACAAAGTTAGCCTCTGCTACATGCATCCTCAGTGACAAGGGTCTTCCTTTGAGACCTGACCAGAATGTATGCACGCATTACAGTCGCTACGGTATCTGCAAATTTGGACCCGCATGTAAGTTTGACCACCCAATAAACCAATCGTTCTCTTTAGGGCCTTCCCTTGATCCGCAATCTCCCTACTCAAACTCTGCTAGAGTTGAAGTAGCTGAAAATGGAGGGGGCAATTGA 423 0.4303 MRPPSAYIMNNPAIEKNIYMQYQKKMQVEEFPERPGEPECSYFLKTRGCKFKSNCKFHHPRNRLTKLASATCILSDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPINQSFSLGPSLDPQSPYSNSARVEVAENGGGN 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00296 140 MobiDBLite consensus disorder prediction 116 130 - -
Accr8g00296 140 SMART c3hfinal6 82 109 IPR000571 GO:0046872
Accr8g00296 140 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Accr8g00296 140 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Accr8g00296 140 SUPERFAMILY CCCH zinc finger 79 108 IPR036855 GO:0046872
Accr8g00296 140 Gene3D - 19 73 - -
Accr8g00296 140 Gene3D - 82 132 - -
Accr8g00296 140 ProSiteProfiles Zinc finger C3H1-type profile. 82 110 IPR000571 GO:0046872
Accr8g00296 140 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 36 61 IPR000571 GO:0046872
Accr8g00296 140 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 108 IPR000571 GO:0046872
Accr8g00296 140 SUPERFAMILY CCCH zinc finger 39 64 IPR036855 GO:0046872
Accr8g00296 140 PANTHER PROTEIN PHOSPHATASE RELATED 21 128 - -
Accr8g00296 140 MobiDBLite consensus disorder prediction 116 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00296 Accr-Chr8 4227948 4228469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00296 20 116 C2H2 Transcription Factor Family AT3G02830 42.268 1.41e-20 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr8g00296 zf-CCCH 3.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00296 - - gmx:100809906 213.001