Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00289 ATGACTACCTTCTTCTTCTTCTTCCTCTGTTTTTTCCTCATCCCTACCCTCATTTCTTCTTCCCCTTTCCACGACGCTGAATCCATCGTCCAAGAGGTAAACAGGAAAATCAATGCCTCTGTTGCTAGGAGGAATTTGGGCTACCTCTCGTGTGGAACTGGAAATCCGATCGACGATTGTTGGAGGTGCGATCCTAATTGGGAGAAGAACAGGCAGAAGCTAGCTGATTGTGCGATAGGGTTCGGAAAGAACGCCATTGGCGGGAGAAACGGCCGGATTTACGTGGTGACCGACGCCGGCGACGACAATCCGGTGAATCCACGGCCGGGGACTCTCCGGCACGCCGTGATTCAAGACGAACCGTTGTGGATCATATTTGCGAGGGACATGGTGATTCAGTTGAAGGAGGAGCTGATCATGAATTCCTTCAAGACCATCGATGGACGAGGTGCGAGCGTCCACATTGCCGGTGGGCCCTGCATAACCATCCAGTACGTAACTAACATTATAATCCATGGAATCCACATACACGACTGTAAGCAGGGAGGGAACGCTATGGTGAGAAGCTCCCCACGGCACTACGGCTGGAGAACCATATCGGACGGCGACGGTGTCTCCATCTTCGGAGGAAGCCACGTGTGGGTAGATCACTGCTCGTTGTCGAACTGCAAAGACGGTTTGATAGACGCGATTATGGAGTCCACCGCGATAACCATTTCCAACAATTACATGACGCACCATGATAAGGTCATGTTACTGGGTCACAGCGATTCTTATGCACAAGACAAGAACATGCAAGTCACCATCGCTTTTAATCACTTTGGAGAAGGCCTCGTCCAAAGAATGCCAAGGTGCAGACATGGATATTTCCATGTGGTGAACAATGACTATACACATTGGGAAATGTATGCCATTGGAGGAAGTGCTAACCCAACCATCAATAGCCAAGGCAACAGATTTGTGGCCCCCGATAACAGATTCAGCAAAGAGGTGACAAAACATGAGGATGCACCAGAGAGTGAATGGAGGGGCTGGAATTGGAGATCAGAAGGGGATTTGTTGGTAAACGGTGCGTTTTTCAGGGCATCAGGTGCTGGAGCCTCTTCTAGCTATGCAAGGGCTTCTAGTTTAAGTGCTAGACCATCTTCTCTTGTGGGTCCCCTCACCTCTGGTGCTGGCACACTCACATGTAGAAAAGGTTCTAGCTGCTGA 1212 0.5 MTTFFFFFLCFFLIPTLISSSPFHDAESIVQEVNRKINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQKLADCAIGFGKNAIGGRNGRIYVVTDAGDDNPVNPRPGTLRHAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRSSPRHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCKDGLIDAIMESTAITISNNYMTHHDKVMLLGHSDSYAQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDNRFSKEVTKHEDAPESEWRGWNWRSEGDLLVNGAFFRASGAGASSSYARASSLSARPSSLVGPLTSGAGTLTCRKGSSC 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00289 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Accr8g00289 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Accr8g00289 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Accr8g00289 403 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Accr8g00289 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Accr8g00289 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Accr8g00289 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Accr8g00289 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Accr8g00289 403 FunFam Pectate lyase 54 396 - -
Accr8g00289 403 SUPERFAMILY Pectin lyase-like 35 397 IPR011050 -
Accr8g00289 403 PANTHER PECTATE LYASE 18-RELATED 24 401 IPR045032 GO:0030570
Accr8g00289 403 SMART amb_all 129 326 IPR002022 -
Accr8g00289 403 Pfam Pectate lyase 138 320 IPR002022 -
Accr8g00289 403 Gene3D - 54 396 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00289 Accr-Chr8 4158712 4160500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00289 4 403 Polysaccharide Lyase AT4G24780 84.040 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00289 K01728 - gmx:100101868 722.235