Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00281 ATGCCTATCACGTCTGTACCTTCCTTGAAGACCCTAACAATGGCAGAATTACGCCTTCTCTCACTTCCTTCTTTAACCTCCAACAAAACCAAACACCCTTTCCTCTCCATTCCGTCTAAACCTTTTAAACTTCAGGGCTCTTGCTCCAATTCCTCACTCTTTCTACCATCTCTGTCCCTCACTAAAAAAACCCACAATTTATCTATACTCACTTTCGTAGCTCAGACTTCGGACTGGGCTCAACAGGACGAAGACAACACCGTCACCGTAGATGAAGAAGACGTGGATGACGCAGAGGCTCGTCTTTCGGATTGGGAGGTCGATGGTGAAGGCGCGGGAATTGAGGGTAGCGAGGTCGAAGGAGAGAGTAATGAAGATGATGAATTTTCGAAGGGCGGGGATTTTGCTGAACCACCCGAAGATGCCAAACTTTTTGTTGGCAATTTGCCTTATGATGTCGATAGTCAGAGATTAGCCATGCTTTTTGAGCAGGCCGGAACGGTGGAAATTGCCGAGGTTATTTATAATAGGAGCACTGACCAAAGTCGTGGATTCGGATTTGTAACGATGAGTACAGTTGAAGAAGCAGAGAAAGCTGTCGAAAAGTTCCATCGCTATGAACTTGATGGAAGGCTGTTGACTGTTAACATTGCTGCTCCAAGAGGAACACAGCTTGAACGCCCACCCAGGGCCTTTGAACCATCCTTTAGAGTCTACGTAGGCAACTTGCCATGGGATGTTGATAATGGTCGCCTGGAGCAGATTTTCAGCGAACATGGTAAGGTTGTGAGCGCACGGGTAGTCTTTGACAGAGAGACTGGTCGATCTCGTGGTTTTGGCTTTGTCACAATGTCCAGTGAAACAGAAATGAATGATGCCATTGCTGCTCTTGATGGCCAGAGTTTGGACGGGAGGGCCATTAGAGTGAATGTTGCTGAGGAAAGGCCAAGGCGAGGCGGCTTCTGA 966 0.4762 MPITSVPSLKTLTMAELRLLSLPSLTSNKTKHPFLSIPSKPFKLQGSCSNSSLFLPSLSLTKKTHNLSILTFVAQTSDWAQQDEDNTVTVDEEDVDDAEARLSDWEVDGEGAGIEGSEVEGESNEDDEFSKGGDFAEPPEDAKLFVGNLPYDVDSQRLAMLFEQAGTVEIAEVIYNRSTDQSRGFGFVTMSTVEEAEKAVEKFHRYELDGRLLTVNIAAPRGTQLERPPRAFEPSFRVYVGNLPWDVDNGRLEQIFSEHGKVVSARVVFDRETGRSRGFGFVTMSSETEMNDAIAALDGQSLDGRAIRVNVAEERPRRGGF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00281 321 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 314 IPR000504 GO:0003723
Accr8g00281 321 SUPERFAMILY RNA-binding domain, RBD 138 228 IPR035979 GO:0003676
Accr8g00281 321 Gene3D - 225 321 IPR012677 -
Accr8g00281 321 CDD RRM2_NsCP33_like 237 312 - -
Accr8g00281 321 SMART rrm1_1 237 310 IPR000504 GO:0003723
Accr8g00281 321 SMART rrm1_1 143 216 IPR000504 GO:0003723
Accr8g00281 321 PANTHER OS02G0815200 PROTEIN 36 316 - -
Accr8g00281 321 Gene3D - 73 224 IPR012677 -
Accr8g00281 321 FunFam 31 kDa ribonucleoprotein, chloroplastic 74 225 - -
Accr8g00281 321 SUPERFAMILY RNA-binding domain, RBD 228 319 IPR035979 GO:0003676
Accr8g00281 321 MobiDBLite consensus disorder prediction 109 137 - -
Accr8g00281 321 FunFam 31 kDa ribonucleoprotein, chloroplastic 226 320 - -
Accr8g00281 321 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 220 IPR000504 GO:0003723
Accr8g00281 321 MobiDBLite consensus disorder prediction 111 125 - -
Accr8g00281 321 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 213 IPR000504 GO:0003723
Accr8g00281 321 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 308 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00281 Accr-Chr8 4018938 4021547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00281 112 318 Eukaryotic Initiation Factors Gene Family AT3G16380 33.184 3.82e-23 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00281 - - qsa:O6P43_030799 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00281 8 4018938 4021547 Accr12g00485 12 4483139 4484889 CCT
Accr8g00281 8 4018938 4021547 Accr12g00485 12 4483139 4484889 ECH
Accr8g00281 8 4018938 4021547 Accr8g00281 8 4018938 4021547 ECH