Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00225 ATGAACCCTTACGACAACAGATATACAGATTCGACTTCTTATCGCAACCGCAGGAGTGATTTAGTCGGATCTACGCCGCCGATGGTCCCTTCAATGATTGGCGGTGCCAGCTCGAGCTACGGCCGGGGAGGTCCTGCTTATAATATGGGTGGAAGAGGTGCTGGGAGCGCTTTTGGAACGGCACCTACTGCCCCAAATTATAAAGAGTTGCCGCCGTTCATGCCACCTCCTGGAGGCTTTGACATAGGTCGCGGTGGTGGTGCTAGCCAAAGGGGCTTCGGCGGTAGACTCGGAGACGGCCATGACGTAGGTCGTCGTGGCGGTGGAAGAGATCGGGGAGGTGGTAGATTTGGTGGAGGTCACGGAGACAAGTCCTCGGGGAGAGGAGGTGGGTTTGGAGGTAGAGGTTTTGGTGGAAGCGCAGGATTTGGCGGGGGCCGTGGCCGTGGAGGTGGTAGAGGAGGAAGACATGGTGGATCTTCCAAGGATGACTTGGACAACATAGCACTTCCCAAGCAAGATTTTAGAAATTTGGTTCCATTTGAGAAGAATTTTTACATCGAAAGCCCCTCGGTGGGGGCCATGTCTGATCATGAGCTTATGGCTTACCGTGCCAGTAGGGAGATCACAGTGCAAGGGCATGATATTCCTAAACCAATTCGAACGTTTCAAGATGCAAATTTTCCTGATTACTTTCTTGAGGTGATTGCCAAGTTGGGTTTTGTGGAGCCTACACCAATTCAAGCTCAAGGTTGGCCCATGGCTCTGAAGGGTAGAGATTTGATTGGCATTGCTGAGACTGGCTCAGGAAAAACACTCGCATATCTGCTTCCTGCTTTAGTGCATATCAGTGCACAACCTCGATTAGTACAAGGTGAAGGTCCCATCGTCTTAGTTCTGGCTCCAACTCGAGAGTTAGCTGTTCAAATTCAGGAAGAAGCTGTAAAATTTGGCTCTCGAGCAAATATCAGAAGTACTTGTATCTATGGTGGTGCCCCAAAGGGACCTCAAATTCGTGATCTTAAGAGAGGTGTTGAAATTGTTATTGCTACACCTGGTCGCCTAATTGATATGTTGGAAGCTCAGCATACAAATCTGCGAAGGGTGACTAACCTTGTTTTGGATGAAGCTGATCGAATGCTGGACATGGGTTTTGAACCTCAGATAAGAAAAATTATTGGGCAGATCCGGCCTGATAGACAGACATTGTACTGGAGTGCAACATGGCCAAGAGAGGTTGAAACTCTGGCAAGGCAGTTTCTACGCAACCCATACAAGGTAATTATTGGATCGCCAGATTTGAAAGCAAATCAATCTATAAATCAAGTTGTTGAAGTTTTAACAGAAGTGGAGAAATACAATAGATTGATCAGATTGCTTAAAGAAGTGATGGATGGGAGTCGAATTCTTATATTTATTGAGACAAAAAAGGGTTGTGATCAAGTTACAAGGCAATTGAGAATGGATGGATGGCCTGCACTTTCTATCCATGGTGATAAAAACCAGGCCGAAAGGGACTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTTCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGGTAGGATCACTGTGTGTTAG 1611 0.4724 MNPYDNRYTDSTSYRNRRSDLVGSTPPMVPSMIGGASSSYGRGGPAYNMGGRGAGSAFGTAPTAPNYKELPPFMPPPGGFDIGRGGGASQRGFGGRLGDGHDVGRRGGGRDRGGGRFGGGHGDKSSGRGGGFGGRGFGGSAGFGGGRGRGGGRGGRHGGSSKDDLDNIALPKQDFRNLVPFEKNFYIESPSVGAMSDHELMAYRASREITVQGHDIPKPIRTFQDANFPDYFLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHISAQPRLVQGEGPIVLVLAPTRELAVQIQEEAVKFGSRANIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLRRVTNLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSPDLKANQSINQVVEVLTEVEKYNRLIRLLKEVMDGSRILIFIETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSSIMTATDVAARGLGRITVC 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00225 536 CDD SF2_C_DEAD 440 530 - -
Accr8g00225 536 MobiDBLite consensus disorder prediction 1 20 - -
Accr8g00225 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 429 IPR027417 -
Accr8g00225 536 Pfam Helicase conserved C-terminal domain 451 530 IPR001650 -
Accr8g00225 536 MobiDBLite consensus disorder prediction 79 167 - -
Accr8g00225 536 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 373 381 IPR000629 -
Accr8g00225 536 Gene3D - 194 433 IPR027417 -
Accr8g00225 536 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 252 427 IPR014001 -
Accr8g00225 536 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 221 249 IPR014014 GO:0003724
Accr8g00225 536 Gene3D - 434 531 IPR027417 -
Accr8g00225 536 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 200 530 - -
Accr8g00225 536 SMART ultradead3 240 443 IPR014001 -
Accr8g00225 536 MobiDBLite consensus disorder prediction 1 36 - -
Accr8g00225 536 FunFam probable ATP-dependent RNA helicase DDX17 183 430 - -
Accr8g00225 536 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 455 536 IPR001650 -
Accr8g00225 536 CDD DEADc_DDX5_DDX17 233 427 - -
Accr8g00225 536 Pfam DEAD/DEAH box helicase 245 416 IPR011545 GO:0003676|GO:0005524
Accr8g00225 536 MobiDBLite consensus disorder prediction 98 118 - -
Accr8g00225 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 438 530 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00225 Accr-Chr8 3036882 3039646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00225 218 530 Eukaryotic Initiation Factors Gene Family AT3G19760 34.185 1.73e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00225 K12823 - twl:119985275 691.034