Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00224 ATGAACCCTTACGACAACAGATATACAGATTCGACTTCTTATCGCAACCGCAGGAGTGATTTAGTCGGATCTACGCCGCCGATGGTCCCTTCAATGATTGGCGGTGCCAGCTCGAGCTACGGCCGGGGAGGTCCTGCTTATAATATGGGTGGAAGAGGTGCTGGGAGCGCTTTTGGAACGGCACCTACTGCCCCAAATTATAAAGAGTTGCCGCCGTTCATGCCACCTCCTGGAGGCTTTGACATAGGTCGCGGTGGTGGTGCTAGCCAAAGGGGCTTCGGCGGTAGACTCGGAGACGGCCATGACGTAGGTCGTCGTGGCGGTGGAAGAGATCGGGGAGGTGGTAGATTTGGTGGAGGTCACGGAGACAAGTCCTCGGGGAGAGGAGGTGGGTTTGGAGGTAGAGGTTTTGGTGGAAGCGCAGGATTTGGCGGGGGCCGTGGCCGTGGAGGTGGTAGAGGAGGAAGACATGGTGGATCTTCCAAGGATGACTTGGACAACATAGCACTTCCCAAGCAAGATTTTAGAAATTTGGTTCCATTTGAGAAGAATTTTTACATCGAAAGCCCCTCGGTGGGGGCCATGTCTGATCATGAGCTTATGGCTTACCGTGCCAGTAGGGAGATCACAGTGCAAGGGCATGATATTCCTAAACCAATTCGAACGTTTCAAGATGCAAATTTTCCTGATTACTTTCTTGAGGTGATTGCCAAGTTGGGTTTTGTGGAGCCTACACCAATTCAAGCTCAAGGTTGGCCCATGGCTCTGAAGGGTAGAGATTTGATTGGCATTGCTGAGACTGGCTCAGGAAAAACACTCGCATATCTGCTTCCTGCTTTAGTGCATATCAGTGCACAACCTCGATTAGTACAAGGTGAAGGTCCCATCGTCTTAGTTCTGGCTCCAACTCGAGAGTTAGCTGTTCAAATTCAGGAAGAAGCTGTAAAATTTGGCTCTCGAGCAAATATCAGAAGTACTTGTATCTATGGTGGTGCCCCAAAGGGACCTCAAATTCGTGATCTTAAGAGAGGTGTTGAAATTGTTATTGCTACACCTGGTCGCCTAATTGATATGTTGGAAGCTCAGCATACAAATCTGCGAAGGGTGACTAACCTTGTTTTGGATGAAGCTGATCGAATGCTGGACATGGGTTTTGAACCTCAGATAAGAAAAATTATTGGGCAGATCCGGCCTGATAGACAGACATTGTACTGGAGTGCAACATGGCCAAGAGAGGTTGAAACTCTGGCAAGGCAGTTTCTACGCAACCCATACAAGGTAATTATTGGATCGCCAGATTTGAAAGCAAATCAATCTATAAATCAAGTTGTTGAAGTTTTAACAGAAGTGGAGAAATACAATAGATTGATCAGATTGCTTAAAGAAGTGATGGATGGGAGTCGAATTCTTATATTTATTGAGACAAAAAAGGGTTGTGATCAAGTTACAAGGCAATTGAGAATGGATGGATGGCCTGCACTTTCTATCCATGGTGATAAAAACCAGGCCGAAAGGGACTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTTCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAGGACATTAAATGTGTGATCAATTATGATTTCCCATCAAGCCTGGAAGATTATGTCCACCGAATTGGTCGAACAGGGCGTGCAGGGGCTAAAGGAAGCGCCTTTACCTTTTTCACGCATGCAAACGCCAAGTTTGCCAGGGATTTGATCAAGATCTTACAAGATGCTGGCCAGGTTGTGAGTCCTGCTCTATCTGCATTGGCTCGGTCAGCTGGTTCTCGTCAATTTGGAACTGGGGGAAACTTCCGCTCCAGGGGACGGGGAGGTTATGGCAATCGAGGTCACATATCTGGATCCAATATCATTCCTCTGGGTTCAAGGAAGCCATGGTAG 1929 0.4754 MNPYDNRYTDSTSYRNRRSDLVGSTPPMVPSMIGGASSSYGRGGPAYNMGGRGAGSAFGTAPTAPNYKELPPFMPPPGGFDIGRGGGASQRGFGGRLGDGHDVGRRGGGRDRGGGRFGGGHGDKSSGRGGGFGGRGFGGSAGFGGGRGRGGGRGGRHGGSSKDDLDNIALPKQDFRNLVPFEKNFYIESPSVGAMSDHELMAYRASREITVQGHDIPKPIRTFQDANFPDYFLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHISAQPRLVQGEGPIVLVLAPTRELAVQIQEEAVKFGSRANIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLRRVTNLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSPDLKANQSINQVVEVLTEVEKYNRLIRLLKEVMDGSRILIFIETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSSIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGSAFTFFTHANAKFARDLIKILQDAGQVVSPALSALARSAGSRQFGTGGNFRSRGRGGYGNRGHISGSNIIPLGSRKPW 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00224 642 MobiDBLite consensus disorder prediction 1 20 - -
Accr8g00224 642 FunFam ATP-dependent RNA helicase RhlB 431 604 - -
Accr8g00224 642 Gene3D - 430 603 IPR027417 -
Accr8g00224 642 Pfam Helicase conserved C-terminal domain 451 561 IPR001650 -
Accr8g00224 642 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 200 600 - -
Accr8g00224 642 MobiDBLite consensus disorder prediction 79 167 - -
Accr8g00224 642 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 373 381 IPR000629 -
Accr8g00224 642 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 252 427 IPR014001 -
Accr8g00224 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 598 IPR027417 -
Accr8g00224 642 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 221 249 IPR014014 GO:0003724
Accr8g00224 642 FunFam probable ATP-dependent RNA helicase DDX17 183 430 - -
Accr8g00224 642 Gene3D - 194 429 IPR027417 -
Accr8g00224 642 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 455 600 IPR001650 -
Accr8g00224 642 SMART ultradead3 240 443 IPR014001 -
Accr8g00224 642 MobiDBLite consensus disorder prediction 1 36 - -
Accr8g00224 642 CDD DEADc_DDX5_DDX17 233 427 - -
Accr8g00224 642 SMART helicmild6 480 561 IPR001650 -
Accr8g00224 642 CDD SF2_C_DEAD 440 570 - -
Accr8g00224 642 MobiDBLite consensus disorder prediction 98 118 - -
Accr8g00224 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 429 IPR027417 -
Accr8g00224 642 Pfam DEAD/DEAH box helicase 245 416 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00224 Accr-Chr8 3035765 3039646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00224 218 581 Eukaryotic Initiation Factors Gene Family AT3G19760 36.264 5.57e-71 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00224 K12823 - gmx:100777610 843.958