Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00223 ATGAACCCTTACGACAACAGATATACAGATTCGACTTCTTATCGCAACCGCAGGAGTGATTTAGTCGGATCTACGCCGCCGATGGTCCCTTCAATGATTGGCGGTGCCAGCTCGAGCTACGGCCGGGGAGGTCCTGCTTATAATATGGGTGGAAGAGGTGCTGGGAGCGCTTTTGGAACGGCACCTACTGCCCCAAATTATAAAGAGTTGCCGCCGTTCATGCCACCTCCTGGAGGCTTTGACATAGGTCGCGGTGGTGGTGCTAGCCAAAGGGGCTTCGGCGGTAGACTCGGAGACGGCCATGACGTAGGTCGTCGTGGCGGTGGAAGAGATCGGGGAGGTGGTAGATTTGGTGGAGGTCACGGAGACAAGTCCTCGGGGAGAGGAGGTGGTAGAGGAGGAAGACATGGTGGATCTTCCAAGGATGACTTGGACAACATAGCACTTCCCAAGCAAGATTTTAGAAATTTGGTTCCATTTGAGAAGAATTTTTACATCGAAAGCCCCTCGGTGGGGGCCATGTCTGATCATGAGCTTATGGCTTACCGTGCCAGTAGGGAGATCACAGTGCAAGGGCATGATATTCCTAAACCAATTCGAACGTTTCAAGATGCAAATTTTCCTGATTACTTTCTTGAGGTGATTGCCAAGTTGGGTTTTGTGGAGCCTACACCAATTCAAGCTCAAGGTTGGCCCATGGCTCTGAAGGGTAGAGATTTGATTGGCATTGCTGAGACTGGCTCAGGAAAAACACTCGCATATCTGCTTCCTGCTTTAGTGCATATCAGTGCACAACCTCGATTAGTACAAGGTGAAGGTCCCATCGTCTTAGTTCTGGCTCCAACTCGAGAGTTAGCTGTTCAAATTCAGGAAGAAGCTGTAAAATTTGGCTCTCGAGCAAATATCAGAAGTACTTGTATCTATGGTGGTGCCCCAAAGGGACCTCAAATTCGTGATCTTAAGAGAGGTGTTGAAATTGTTATTGCTACACCTGGTCGCCTAATTGATATGTTGGAAGCTCAGCATACAAATCTGCGAAGGGTGACTAACCTTGTTTTGGATGAAGCTGATCGAATGCTGGACATGGGTTTTGAACCTCAGATAAGAAAAATTATTGGGCAGATCCGGCCTGATAGACAGACATTGTACTGGAGTGCAACATGGCCAAGAGAGGTTGAAACTCTGGCAAGGCAGTTTCTACGCAACCCATACAAGGTAATTATTGGATCGCCAGATTTGAAAGCAAATCAATCTATAAATCAAGTTGTTGAAGTTTTAACAGAAGTGGAGAAATACAATAGATTGATCAGATTGCTTAAAGAAGTGATGGATGGGAGTCGAATTCTTATATTTATTGAGACAAAAAAGGGTTGTGATCAAGTTACAAGGCAATTGAGAATGGATGGATGGCCTGCACTTTCTATCCATGGTGATAAAAACCAGGCCGAAAGGGACTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTTCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAGGACATTAAATGTGTGATCAATTATGATTTCCCATCAAGCCTGGAAGATTATGTCCACCGAATTGGTCGAACAGGGCGTGCAGGGGCTAAAGGAAGCGCCTTTACCTTTTTCACGCATGCAAACGCCAAGTTTGCCAGGGATTTGATCAAGATCTTACAAGATGCTGGCCAGGTTGTGAGTCCTGCTCTATCTGCATTGGCTCGGTCAGCTGGTTCTCGTCAATTTGGAACTGGGGGAAACTTCCGCTCCAGGGGACGGGGAGGTTATGGCAATCGAGGTCACATATCTGGATCCAATATCATTCCTCTGGGTTCAAGGAAGCCATGGTAG 1866 0.47 MNPYDNRYTDSTSYRNRRSDLVGSTPPMVPSMIGGASSSYGRGGPAYNMGGRGAGSAFGTAPTAPNYKELPPFMPPPGGFDIGRGGGASQRGFGGRLGDGHDVGRRGGGRDRGGGRFGGGHGDKSSGRGGGRGGRHGGSSKDDLDNIALPKQDFRNLVPFEKNFYIESPSVGAMSDHELMAYRASREITVQGHDIPKPIRTFQDANFPDYFLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHISAQPRLVQGEGPIVLVLAPTRELAVQIQEEAVKFGSRANIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLRRVTNLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSPDLKANQSINQVVEVLTEVEKYNRLIRLLKEVMDGSRILIFIETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSSIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGSAFTFFTHANAKFARDLIKILQDAGQVVSPALSALARSAGSRQFGTGGNFRSRGRGGYGNRGHISGSNIIPLGSRKPW 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00223 621 CDD DEADc_DDX5_DDX17 212 406 - -
Accr8g00223 621 Pfam Helicase conserved C-terminal domain 430 540 IPR001650 -
Accr8g00223 621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 577 IPR027417 -
Accr8g00223 621 SMART helicmild6 459 540 IPR001650 -
Accr8g00223 621 MobiDBLite consensus disorder prediction 1 20 - -
Accr8g00223 621 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 352 360 IPR000629 -
Accr8g00223 621 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 200 228 IPR014014 GO:0003724
Accr8g00223 621 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 231 406 IPR014001 -
Accr8g00223 621 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 434 579 IPR001650 -
Accr8g00223 621 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 179 579 - -
Accr8g00223 621 CDD SF2_C_DEAD 419 549 - -
Accr8g00223 621 MobiDBLite consensus disorder prediction 1 36 - -
Accr8g00223 621 FunFam ATP-dependent RNA helicase RhlB 410 583 - -
Accr8g00223 621 Gene3D - 173 408 IPR027417 -
Accr8g00223 621 SMART ultradead3 219 422 IPR014001 -
Accr8g00223 621 MobiDBLite consensus disorder prediction 78 147 - -
Accr8g00223 621 MobiDBLite consensus disorder prediction 98 118 - -
Accr8g00223 621 Pfam DEAD/DEAH box helicase 224 395 IPR011545 GO:0003676|GO:0005524
Accr8g00223 621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 408 IPR027417 -
Accr8g00223 621 FunFam probable ATP-dependent RNA helicase DDX17 162 409 - -
Accr8g00223 621 Gene3D - 409 582 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00223 Accr-Chr8 3035765 3039646 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00223 197 560 Eukaryotic Initiation Factors Gene Family AT3G19760 36.264 1.27e-71 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00223 K12823 - gmx:100777610 886.33