Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00222 ATGAACCCTTACGACAACAGATATACAGATTCGACTTCTTATCGCAACCGCAGGAGTGATTTAGTCGGATCTACGCCGCCGATGGTCCCTTCAATGATTGGCGGTGCCAGCTCGAGCTACGGCCGGGGAGGTCCTGCTTATAATATGGGTGGAAGAGGTGCTGGGAGCGCTTTTGGAACGGCACCTACTGCCCCAAATTATAAAGAGTTGCCGCCGTTCATGCCACCTCCTGGAGGCTTTGACATAGGTCGCGGTGGTGGTGCTAGCCAAAGGGGCTTCGGCGGTAGACTCGGAGACGGCCATGACGTAGGTCGTCGTGGCGGTGGAAGAGATCGGGGAGGTGGTAGAGGTTTTGGTGGAAGCGCAGGATTTGGCGGGGGCCGTGGCCGTGGAGGTGGTAGAGGAGGAAGACATGGTGGATCTTCCAAGGATGACTTGGACAACATAGCACTTCCCAAGCAAGATTTTAGAAATTTGGTTCCATTTGAGAAGAATTTTTACATCGAAAGCCCCTCGGTGGGGGCCATGTCTGATCATGAGCTTATGGCTTACCGTGCCAGTAGGGAGATCACAGTGCAAGGGCATGATATTCCTAAACCAATTCGAACGTTTCAAGATGCAAATTTTCCTGATTACTTTCTTGAGGTGATTGCCAAGTTGGGTTTTGTGGAGCCTACACCAATTCAAGCTCAAGGTTGGCCCATGGCTCTGAAGGGTAGAGATTTGATTGGCATTGCTGAGACTGGCTCAGGAAAAACACTCGCATATCTGCTTCCTGCTTTAGTGCATATCAGTGCACAACCTCGATTAGTACAAGGTGAAGGTCCCATCGTCTTAGTTCTGGCTCCAACTCGAGAGTTAGCTGTTCAAATTCAGGAAGAAGCTGTAAAATTTGGCTCTCGAGCAAATATCAGAAGTACTTGTATCTATGGTGGTGCCCCAAAGGGACCTCAAATTCGTGATCTTAAGAGAGGTGTTGAAATTGTTATTGCTACACCTGGTCGCCTAATTGATATGTTGGAAGCTCAGCATACAAATCTGCGAAGGGTGACTAACCTTGTTTTGGATGAAGCTGATCGAATGCTGGACATGGGTTTTGAACCTCAGATAAGAAAAATTATTGGGCAGATCCGGCCTGATAGACAGACATTGTACTGGAGTGCAACATGGCCAAGAGAGGTTGAAACTCTGGCAAGGCAGTTTCTACGCAACCCATACAAGGTAATTATTGGATCGCCAGATTTGAAAGCAAATCAATCTATAAATCAAGTTGTTGAAGTTTTAACAGAAGTGGAGAAATACAATAGATTGATCAGATTGCTTAAAGAAGTGATGGATGGGAGTCGAATTCTTATATTTATTGAGACAAAAAAGGGTTGTGATCAAGTTACAAGGCAATTGAGAATGGATGGATGGCCTGCACTTTCTATCCATGGTGATAAAAACCAGGCCGAAAGGGACTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTTCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAGGACATTAAATGTGTGATCAATTATGATTTCCCATCAAGCCTGGAAGATTATGTCCACCGAATTGGTCGAACAGGGCGTGCAGGGGCTAAAGGAAGCGCCTTTACCTTTTTCACGCATGCAAACGCCAAGTTTGCCAGGGATTTGATCAAGATCTTACAAGATGCTGGCCAGGTTGTGAGTCCTGCTCTATCTGCATTGGCTCGGTCAGCTGGTTCTCGTCAATTTGGAACTGGGGGAAACTTCCGCTCCAGGGGACGGGGAGGTTATGGCAATCGAGGTCACATATCTGGATCCAATATCATTCCTCTGGGTTCAAGGAAGCCATGGTAG 1872 0.4722 MNPYDNRYTDSTSYRNRRSDLVGSTPPMVPSMIGGASSSYGRGGPAYNMGGRGAGSAFGTAPTAPNYKELPPFMPPPGGFDIGRGGGASQRGFGGRLGDGHDVGRRGGGRDRGGGRGFGGSAGFGGGRGRGGGRGGRHGGSSKDDLDNIALPKQDFRNLVPFEKNFYIESPSVGAMSDHELMAYRASREITVQGHDIPKPIRTFQDANFPDYFLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHISAQPRLVQGEGPIVLVLAPTRELAVQIQEEAVKFGSRANIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLRRVTNLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSPDLKANQSINQVVEVLTEVEKYNRLIRLLKEVMDGSRILIFIETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSSIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGSAFTFFTHANAKFARDLIKILQDAGQVVSPALSALARSAGSRQFGTGGNFRSRGRGGYGNRGHISGSNIIPLGSRKPW 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00222 623 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 354 362 IPR000629 -
Accr8g00222 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 579 IPR027417 -
Accr8g00222 623 CDD SF2_C_DEAD 421 551 - -
Accr8g00222 623 SMART ultradead3 221 424 IPR014001 -
Accr8g00222 623 MobiDBLite consensus disorder prediction 1 20 - -
Accr8g00222 623 MobiDBLite consensus disorder prediction 82 148 - -
Accr8g00222 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 410 IPR027417 -
Accr8g00222 623 Gene3D - 175 410 IPR027417 -
Accr8g00222 623 SMART helicmild6 461 542 IPR001650 -
Accr8g00222 623 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 181 581 - -
Accr8g00222 623 MobiDBLite consensus disorder prediction 98 112 - -
Accr8g00222 623 FunFam ATP-dependent RNA helicase RhlB 412 585 - -
Accr8g00222 623 Pfam Helicase conserved C-terminal domain 432 542 IPR001650 -
Accr8g00222 623 CDD DEADc_DDX5_DDX17 214 408 - -
Accr8g00222 623 Pfam DEAD/DEAH box helicase 226 397 IPR011545 GO:0003676|GO:0005524
Accr8g00222 623 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 436 581 IPR001650 -
Accr8g00222 623 MobiDBLite consensus disorder prediction 1 36 - -
Accr8g00222 623 FunFam probable ATP-dependent RNA helicase DDX17 164 411 - -
Accr8g00222 623 Gene3D - 411 584 IPR027417 -
Accr8g00222 623 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 202 230 IPR014014 GO:0003724
Accr8g00222 623 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 233 408 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00222 Accr-Chr8 3035765 3039646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00222 199 562 Eukaryotic Initiation Factors Gene Family AT3G19760 36.264 1.40e-71 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00222 K12823 - gmx:100777610 885.56