Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00216 ATGGCCTCGTCGTCAAGCTCATACAATTCGCCATGTGCGGCGTGCAAATTCTTGAGGAGAAAATGCTTGCCAGGTTGCTTATTCGCTCCTTACTTCCCACCGGAAGAGCCTCAGAAATTCGCCAACGTCCACAAGATATTCGGAGCCAGCAACGTCACTAAGCTCCTCAACGAGCTCCTCCCTCACCAGCGAGAAGACGCTGTTAACTCCCTCGCCTACGAGGCGGAGGCTCGCGTCAGAGACCCTGTCTACGGCTGCGTCGGCGCCATCACTTTCCTCCAGAGACAGGTCCAGAGACTTCAGAAGGAGCTTGACGCCGCCAACGCCGATCTCCTTCGTTATGCCTGCCATGACATATCGTCGCCTCCGCCGCCTGCATTTCAACCGTTTGCCGTTTCTGATGGCATTTACAGGCAATCTTCGAGCAGTTATTCTCTTCCGTGGGCTGATTCTTCTTCGGAGGACATAAATAATGGAGGAGGAGGAGGTAATTTGTGA 498 0.5382 MASSSSSYNSPCAACKFLRRKCLPGCLFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAITFLQRQVQRLQKELDAANADLLRYACHDISSPPPPAFQPFAVSDGIYRQSSSSYSLPWADSSSEDINNGGGGGNL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00216 165 MobiDBLite consensus disorder prediction 143 165 - -
Accr8g00216 165 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Accr8g00216 165 Coils Coil 90 117 - -
Accr8g00216 165 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Accr8g00216 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00216 Accr-Chr8 2923034 2923531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00216 1 115 AS2 family AT5G63090 91.304 4.58e-76 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Accr8g00216 LOB 9.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00216 - - mtr:25493732 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00216 8 2923034 2923531 Accr12g00516 12 4814741 4815361 CCT
Accr8g00216 8 2923034 2923531 Accr12g00516 12 4814741 4815361 ECH
Accr8g00216 8 2923034 2923531 Accr8g00216 8 2923034 2923531 ECH