Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00180 ATGGATCTGGATACAAAGATCAGACAAAACTATGTCTCCCAACATCCAATGCAGTTGCAAGAAATGGAAGCAAAATCCAACGTAAAAGATCTCGAACTTTCTAATTTTGGTGTTCCTTCATCACAGGGTAATAATTTCTTGCAAGATTTACTCTTTATAGATCCATTTCAAGCATATGGGTGTTCATCAAATCCAGTTACTACTGGGTTCCAAACTGCAAATTCTGTTAACCCTTTTGATAGTTTTTCCTTTGGCTGTTCATCATCATCAGCAATAGATTTTGATGTTTACGAGTCAAAACCATTTAATGAAAATATTAATGGCAACATAGTCATGGAGAATAATTTCCAGTTTGGAGGTAATAATTATAGCTTCAACGTCGTCTCTCAAGAGAGGAATCAAATGGAAATGGTGGGTGCAGATAACCTGATGAGCAATTATTATTTGCCGTTTGATTCTCAAGAAACCAACAAGACTATGAATTTCGTGGTACCAGAAGATGAAGTATCAATAATATCTGCAGATCATAGTTTTCTCAGAAGGGTTGGTTTGAATAATAATAAGAAGAATAGAAGGTTATCATCAACTTCAACCAGAAGGGCATGCAAAGTTCGTAACAAGTCCAACGTAGTAAAGGGACAGTGGACGGTGGAAGAAGATAGGCTGCTAATTCAACTGGTTGAACAATACGGAGTAAGAAAGTGGTCTCATATTGCTCAGAGTTTGCCTGGCAGAATAGGCAAACAATGCCGAGAGCGTTGGCATAATCATCTAAGGCCTAACATCAAGAAGGAGACATGGAGTAATGAAGAGGACAAGATACTGATCGAAGCACACATAGAGAAAGGAAATAAATGGGCAGAGATTGCAAAGAAGTTGCCTGCAAGAACTGAAAACTCCATAAAAAACCATTGGAATGCAACCAAGAGAAGGCAATATTCTAGAAGAAAGTGTCGCTCTAAGCACCCTAAACCCTCTCTTCTTCAAGACTACATCAAGAGCTTGAACTTAGACAAAAACCCACGCAAAGATTATAGGAAAAGATCCTCTTCTTCTGCTATCCCCAAGAACGACAACAACAATCCTATGACTGGTCCAACAAAGAAAGCATCATCATCAGCTACACCGGCATCGAGTGAGCAGTTTTGTCCCGATAATGACAGATTAATTCCTACATATGACTTCAACGAGGTCCCAGACTTTTGTTTCGATGAGAACACAACTTTGTTTCAAGAGGTGTGCAATCTTGATTCTTTGCTTGATGATATGCCTTGTGATTCTGATCATATTGTTCAAGGAGGAGACTTTGAAGCAAAGTTGCAATTTTTTGGCGATGTCATTGTTAATAATAGTATTTATCTTGATGGGGATGATCAGTTTGATTCAGGGAAATCACAGAATCATGAGGAGGTGGAAGTTAAGAAGGAGATGGATTTGATGGAGATGATGTCTCAAATGAAAGATGTTCTTTGA 1473 0.3836 MDLDTKIRQNYVSQHPMQLQEMEAKSNVKDLELSNFGVPSSQGNNFLQDLLFIDPFQAYGCSSNPVTTGFQTANSVNPFDSFSFGCSSSSAIDFDVYESKPFNENINGNIVMENNFQFGGNNYSFNVVSQERNQMEMVGADNLMSNYYLPFDSQETNKTMNFVVPEDEVSIISADHSFLRRVGLNNNKKNRRLSSTSTRRACKVRNKSNVVKGQWTVEEDRLLIQLVEQYGVRKWSHIAQSLPGRIGKQCRERWHNHLRPNIKKETWSNEEDKILIEAHIEKGNKWAEIAKKLPARTENSIKNHWNATKRRQYSRRKCRSKHPKPSLLQDYIKSLNLDKNPRKDYRKRSSSSAIPKNDNNNPMTGPTKKASSSATPASSEQFCPDNDRLIPTYDFNEVPDFCFDENTTLFQEVCNLDSLLDDMPCDSDHIVQGGDFEAKLQFFGDVIVNNSIYLDGDDQFDSGKSQNHEEVEVKKEMDLMEMMSQMKDVL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00180 490 SUPERFAMILY Homeodomain-like 209 305 IPR009057 -
Accr8g00180 490 Gene3D - 265 317 - -
Accr8g00180 490 Gene3D - 211 263 - -
Accr8g00180 490 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 262 IPR017930 -
Accr8g00180 490 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 263 313 IPR017930 -
Accr8g00180 490 PANTHER MYB PROTEIN-RELATED 188 364 - -
Accr8g00180 490 CDD SANT 215 258 IPR001005 -
Accr8g00180 490 MobiDBLite consensus disorder prediction 308 322 - -
Accr8g00180 490 CDD SANT 266 309 IPR001005 -
Accr8g00180 490 ProSiteProfiles Myb-like domain profile. 207 258 IPR001005 -
Accr8g00180 490 Pfam Myb-like DNA-binding domain 215 273 - -
Accr8g00180 490 MobiDBLite consensus disorder prediction 300 323 - -
Accr8g00180 490 SMART sant 263 311 IPR001005 -
Accr8g00180 490 SMART sant 211 260 IPR001005 -
Accr8g00180 490 ProSiteProfiles Myb-like domain profile. 259 309 IPR001005 -
Accr8g00180 490 MobiDBLite consensus disorder prediction 339 383 - -
Accr8g00180 490 MobiDBLite consensus disorder prediction 352 382 - -
Accr8g00180 490 FunFam Transcriptional activator Myb isoform A 211 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00180 Accr-Chr8 2523912 2526363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00180 65 433 MYB Transcription Factor Family AT4G18770 47.792 2.52e-100 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr8g00180 Myb_DNA-bind_6 9.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00180 K09422 - qsa:O6P43_022705 447.203