Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00179 ATGCTTCCCTCATTTTCCGTCTCACTCTCTGCCATGGATCTGGATACAAAGATCAGACAAAACTATGTCTCCCAACATCCAATGCAGTTGCAAGAAATGGAAGCAAAATCCAACGTAAAAGATCTCGAACTTTCTAATTTTGGTGTTCCTTCATCACAGGGTAATAATTTCTTGCAAGATTTACTCTTTATAGATCCATTTCAAGCATATGGGTGTTCATCAAATCCAGTTACTACTGGGTTCCAAACTGCAAATTCTGTTAACCCTTTTGATAGTTTTTCCTTTGGCTGTTCATCATCATCAGCAATAGATTTTGATGTTTACGAGTCAAAACCATTTAATGAAAATATTAATGGCAACATAGTCATGGAGAATAATTTCCAGTTTGGAGGTAATAATTATAGCTTCAACGTCGTCTCTCAAGAGAGGAATCAAATGGAAATGGTGGGTGCAGATAACCTGATGAGCAATTATTATTTGCCGTTTGATTCTCAAGAAACCAACAAGACTATGAATTTCGTGGTACCAGAAGATGAAGTATCAATAATATCTGCAGATCATAGTTTTCTCAGAAGGGTTGGTTTGAATAATAATAAGAAGAATAGAAGGTTATCATCAACTTCAACCAGAAGGGCATGCAAAGTTCGTAACAAGTCCAACGTAGTAAAGGGACAGTGGACGGTGGAAGAAGATAGGCTGCTAATTCAACTGGTTGAACAATACGGAGTAAGAAAGTGGTCTCATATTGCTCAGAGTTTGCCTGGCAGAATAGGCAAACAATGCCGAGAGCGTTGGCATAATCATCTAAGGCCTAACATCAAGAAGGAGACATGGAGTAATGAAGAGGACAAGATACTGATCGAAGCACACATAGAGAAAGGAAATAAATGGGCAGAGATTGCAAAGAAGTTGCCTGCAAGAACTGAAAACTCCATAAAAAACCATTGGAATGCAACCAAGAGAAGGCAATATTCTAGAAGAAAGTGTCGCTCTAAGCACCCTAAACCCTCTCTTCTTCAAGACTACATCAAGAGCTTGAACTTAGACAAAAACCCACGCAAAGATTATAGGAAAAGATCCTCTTCTTCTGCTATCCCCAAGAACGACAACAACAATCCTATGACTGGTCCAACAAAGAAAGCATCATCATCAGCTACACCGGCATCGAGTGAGCAGTTTTGTCCCGATAATGACAGATTAATTCCTACATATGACTTCAACGAGGTCCCAGACTTTTGTTTCGATGAGAACACAACTTTGTTTCAAGAGGTGTGCAATCTTGATTCTTTGCTTGATGATATGCCTTGTGATTCTGATCATATTGTTCAAGGAGGAGACTTTGAAGCAAAGTTGCAATTTTTTGGCGATGTCATTGTTAATAATAGTATTTATCTTGATGGGGATGATCAGTTTGATTCAGGGAAATCACAGAATCATGAGGAGGTGGAAGTTAAGAAGGAGATGGATTTGATGGAGATGATGTCTCAAATGAAAGATGTTCTTTGA 1506 0.3865 MLPSFSVSLSAMDLDTKIRQNYVSQHPMQLQEMEAKSNVKDLELSNFGVPSSQGNNFLQDLLFIDPFQAYGCSSNPVTTGFQTANSVNPFDSFSFGCSSSSAIDFDVYESKPFNENINGNIVMENNFQFGGNNYSFNVVSQERNQMEMVGADNLMSNYYLPFDSQETNKTMNFVVPEDEVSIISADHSFLRRVGLNNNKKNRRLSSTSTRRACKVRNKSNVVKGQWTVEEDRLLIQLVEQYGVRKWSHIAQSLPGRIGKQCRERWHNHLRPNIKKETWSNEEDKILIEAHIEKGNKWAEIAKKLPARTENSIKNHWNATKRRQYSRRKCRSKHPKPSLLQDYIKSLNLDKNPRKDYRKRSSSSAIPKNDNNNPMTGPTKKASSSATPASSEQFCPDNDRLIPTYDFNEVPDFCFDENTTLFQEVCNLDSLLDDMPCDSDHIVQGGDFEAKLQFFGDVIVNNSIYLDGDDQFDSGKSQNHEEVEVKKEMDLMEMMSQMKDVL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00179 501 MobiDBLite consensus disorder prediction 319 333 - -
Accr8g00179 501 CDD SANT 226 269 IPR001005 -
Accr8g00179 501 FunFam Transcriptional activator Myb isoform A 222 275 - -
Accr8g00179 501 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 218 273 IPR017930 -
Accr8g00179 501 MobiDBLite consensus disorder prediction 311 334 - -
Accr8g00179 501 Pfam Myb-like DNA-binding domain 226 284 - -
Accr8g00179 501 ProSiteProfiles Myb-like domain profile. 218 269 IPR001005 -
Accr8g00179 501 MobiDBLite consensus disorder prediction 350 394 - -
Accr8g00179 501 Gene3D - 222 274 - -
Accr8g00179 501 SMART sant 222 271 IPR001005 -
Accr8g00179 501 SMART sant 274 322 IPR001005 -
Accr8g00179 501 MobiDBLite consensus disorder prediction 363 393 - -
Accr8g00179 501 CDD SANT 277 320 IPR001005 -
Accr8g00179 501 Gene3D - 276 328 - -
Accr8g00179 501 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 274 324 IPR017930 -
Accr8g00179 501 ProSiteProfiles Myb-like domain profile. 270 320 IPR001005 -
Accr8g00179 501 PANTHER MYB PROTEIN-RELATED 199 375 - -
Accr8g00179 501 SUPERFAMILY Homeodomain-like 220 316 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00179 Accr-Chr8 2523912 2526396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00179 76 444 MYB Transcription Factor Family AT4G18770 47.792 2.82e-100 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr8g00179 Myb_DNA-bind_6 1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00179 K09422 - qsa:O6P43_022705 447.203