Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00172 ATGGATTTTTCTCCTCTTCACGAGCACGTCTGCATGGAATCTTCGGATCACTGGCTTCAGGGAGCATTTCAAGAGGAATCTGGAGGAGTGGCAATGGATTCTTCATCTTCTTCTCCACCATTAATGGAGAGGAGGGTAAGGCCAGCACCAACAGACCAAGCTTTGAAGTGTCCGAGGTGTGATTCGACAAATACCAAGTTCTGCTACTACAACAACTATAGTCTCTCTCAGCCAAGGTACTTCTGCAAAACTTGCAGAAGGTACTGGACCAAAGGAGGCACATTGAGAAACATCCCAGTAGGTGGAGGTTGCAGAAAGAACAAGAAAGTCTCATCCAAGAAACAAAACGACGTCGCTCATCACTCACAGTCGTTGGAATTACCCAATAATAAAGATCTTCTTCAACTCACAGCAGCCTCTAGTTTCCCAGATCATCATGCTATTCATTTTCCACATTCAGTGGGACTAATGGTGGAGAATAGTTCTTCCAGGCTCATGATAAATAATGTTATGGCAAATATTGGTGATACCGCAGCGAATATTGCTAATCAGGTAAATTATAGCCAAAATGGGCTATTGGGGCAGAGTTATTTCCAGGGTTTTGGAGGAAATATGTGTTACTTTGATGGCTATAATAGTAATGGTGGGACTTATAGCACAATGGACACTTTTTACCATGGAAATGATGAGGATCAAAATGTTGGTGCAATGATTCATGATGTGAAGCCAAATCATAAGATGTTGTCTCTTGAATGGCAAGACCACCACCAAGTTTGTTCTGATGCTGGGAAAGATCCTTTTGGGTATATCAACACTACTACGTTGGGATCATGGACTGGTATGATCAATGGTTATGGACCCTCCACAACAAACCCTTTGATCTGA 885 0.4249 MDFSPLHEHVCMESSDHWLQGAFQEESGGVAMDSSSSSPPLMERRVRPAPTDQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKQNDVAHHSQSLELPNNKDLLQLTAASSFPDHHAIHFPHSVGLMVENSSSRLMINNVMANIGDTAANIANQVNYSQNGLLGQSYFQGFGGNMCYFDGYNSNGGTYSTMDTFYHGNDEDQNVGAMIHDVKPNHKMLSLEWQDHHQVCSDAGKDPFGYINTTTLGSWTGMINGYGPSTTNPLI 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00172 294 Pfam Dof domain, zinc finger 52 109 IPR003851 GO:0003677|GO:0006355
Accr8g00172 294 MobiDBLite consensus disorder prediction 28 49 - -
Accr8g00172 294 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Accr8g00172 294 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 42 199 IPR045174 GO:0003700|GO:0006355
Accr8g00172 294 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00172 Accr-Chr8 2458344 2459590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00172 32 112 C2C2-Dof Transcription Factor Family AT5G60200 71.605 5.03e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Accr8g00172 zf-Dof 5.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00172 - - pcin:129309705 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00172 8 2458344 2459590 Accr12g00547 12 5116160 5117666 CCT