LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr8g00165	ATGAGGAATTTTTGCTGGTCTAAACAAGTTCCGCTCAACCAGAAACTTGGGAGAAGGCTTTCGCTTGGCGAATACAAGCGAGCCGTGTCGTGGTCCAAGTATCTGGTCTCCTCTGGGGCTGCAATAAAGGAAGATGGAGAAGAGGATTGGAGCGCCGACTTGTCCAGGTTGCTCATTGGTGCCAAATTTGCTATTGGCAGTCATAGTAGGATTTATAAAGGTGTATACAAGAACGCCGAAGTGGCAATTAAGTGTATAAGTCTACCGGAGGAGGACGAAGACTTGGCTTCTTTGCTCGAGAGGCAGTTTAATTCTGAGGTTACCATGCTCTTTCGACTGCATCATCCGAATATCATCAAGCTAGTTGCCGCTTGCAAGAAACCTCCTGTCTTCTGCATAATTACTGAATATATGCCTGGGGGGTCATTGAGAATATACCTGCGTAACCAAAATCCTTATTCACTCCCACCCAAACTTGTTCTGAAATTAGCCCTAGACATTGCACGGGGTATGCAATATCTTCATTCTCAGGGGATACTTCATAGGGATCTCAAATCAGAAAACCTTCTTCTGGGAGGAGATATGCATGTAAAAGTAGCAGACTTTGGAATCTCGTGCCAAGAATCTGAGAGGTTTACCACTAATGAATTTATTGGAACTTATCGTTGGATGGCACCTGAAATGTTGAGAAAAAAGAATCATACCAAGAAAGCAGATGTGTACAGTTTTGGCATAGTTCTATGGGAGCTTTTAACAGCATTGACACCATATGAGAACATGACACCAGAGCAGGCAGCATTTGCAGCCTCCCAAAAGAATGTGAGGCCACCATTGTCACCTGAATGTCCATTGGCATTTACAAGTCTGGTCACCAGATGCTGGGCAGCCAATCCACGTAAACGGCCACACTTTAATGAGATAGTTTCAATCTTGGAGGGCTATTCAGAATCCCTGAAGGAGGATCCAGACTTCTTCTCTAATTTTATACCACCTTCTCCTAATACTAATATCATTAAGGATTACTTACCAGACTGCATTTCTGGTCGTAAATCTGCTCTGTGTCATGCTTAA	1071	0.436	MRNFCWSKQVPLNQKLGRRLSLGEYKRAVSWSKYLVSSGAAIKEDGEEDWSADLSRLLIGAKFAIGSHSRIYKGVYKNAEVAIKCISLPEEDEDLASLLERQFNSEVTMLFRLHHPNIIKLVAACKKPPVFCIITEYMPGGSLRIYLRNQNPYSLPPKLVLKLALDIARGMQYLHSQGILHRDLKSENLLLGGDMHVKVADFGISCQESERFTTNEFIGTYRWMAPEMLRKKNHTKKADVYSFGIVLWELLTALTPYENMTPEQAAFAASQKNVRPPLSPECPLAFTSLVTRCWAANPRKRPHFNEIVSILEGYSESLKEDPDFFSNFIPPSPNTNIIKDYLPDCISGRKSALCHA	356

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr8g00165	356	SUPERFAMILY	Protein kinase-like (PK-like)	47	311	IPR011009	-
	Accr8g00165	356	SMART	serkin_6	57	310	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr8g00165	356	Pfam	Protein tyrosine and serine/threonine kinase	61	311	IPR001245	GO:0004672\|GO:0006468
	Accr8g00165	356	Gene3D	Phosphorylase Kinase; domain 1	47	138	-	-
	Accr8g00165	356	CDD	STKc_MAP3K-like	64	311	-	-
	Accr8g00165	356	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	53	316	-	-
	Accr8g00165	356	Gene3D	Transferase(Phosphotransferase) domain 1	139	327	-	-
	Accr8g00165	356	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	179	191	IPR008271	GO:0004672\|GO:0006468
	Accr8g00165	356	PRINTS	Tyrosine kinase catalytic domain signature	219	229	IPR001245	GO:0004672\|GO:0006468
	Accr8g00165	356	PRINTS	Tyrosine kinase catalytic domain signature	282	304	IPR001245	GO:0004672\|GO:0006468
	Accr8g00165	356	PRINTS	Tyrosine kinase catalytic domain signature	173	191	IPR001245	GO:0004672\|GO:0006468
	Accr8g00165	356	PRINTS	Tyrosine kinase catalytic domain signature	238	260	IPR001245	GO:0004672\|GO:0006468
	Accr8g00165	356	PRINTS	Tyrosine kinase catalytic domain signature	135	148	IPR001245	GO:0004672\|GO:0006468
	Accr8g00165	356	ProSiteProfiles	Protein kinase domain profile.	57	325	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr8g00165	Accr-Chr8	2344357	2347034	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr8g00165	30	347	MAP Kinase Kinase Kinase	AT1G62400	55.140	1.04e-124	362

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Accr8g00165		PK_Tyr_Ser-Thr	3e-63	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr8g00165	-		-	qsa:O6P43_030877	514.227