Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00160 ATGTCTCGTTACTCAAACCACGACCATCGTCGTCTTCTCTCTTCTCCTGCTGTATTCCCATGCCGAGACATCTCTCCCTCCACTCTTCTCACTTCTTTAATCTCTCTCTCCCTCAATATCTGTAATTTTAAATCCAGATTCTTCCCCACACAGCGACGTAATGCCCGAGAAATCACACGCCAGGTTCATGTCACCCTCATGTTCCTCCAGGATCTTCCAGAAATCCCAGAACAATCCCCTTTTATTCTCTGTTTCTCCGAGCTCCACTTTAGTTTCCAGAAGATTCTGTTCTTGCTTCAAGATTGCACTCGTGAACGTTCCAGAGTATGGATGCTCATGAAGTCCCAATACGTCGCCTCCCAATTTCGCGACATAATTCGTGGTGTTGCCACTGCGCTTGACGTTTTATTATTGCCTCTGCGTCGGATTGAGGTTTGTGATGACGTGAAGGAATTGGTGGAACTCGTGGCCAACCAAGCTCGGAAAGTGAAGTTCGAAGTTGATCCTGTCGATGAAGAGAATTCAAAACTAGTTGGTTCGATTTTGTGTCAGTTTGAGAAGGGAATTGAGCCTGAATTGGATGATATGAAGCAAGTTTTCGATTATCTAGAGATAAAGACTTGGACTGATTGTAACAATGAGATTGAATTCTTACAATATGAGATGGATTTTCAGTTCTCGGAGTGCAAAGAGCCTGAGGCTCCTCTTTTAAGTGGTCTAATCGGATTTTTGAGTTATTGTAGAGGAGTGATATTTGAAAATCATGATCCTAGCAGACTCATAGATCATTCAGAAGGAAGGTGTACTACAAAGAAGATGATTAATGGCTTGAACCCTGAGGATTTTCGATGCCCAATTTCACTTGAGCTAATGACGGACCCAGTAACTATATCAACAGGTCACACCTACGATCGAAGTTCAATTCAACAATGGCTGAAATCTGGAAACAAAACCTGTCCTAAAACAGGGGCGAGGCTGAAGAACACAAACGTAATCCCAAACATAATACTCCAAAAGCTTATACAACAATTCTGCGTCGATAAGGGTGTTTCCTCGACCAAATTTAACAATCAAAGTCGCGACATAACGAAGACCGTCCTCCCAGGAAGCCCCTCAGCGGCTCACGCCATGCAATTTTTGTCCTGGTTTCTTGCTCGGAGGCTCGTTTTTGGAACAATGGAGCAGAAGAATAAAGCAGCCTACGAGATTCGTTTGCTTGGAAGATCCAACATTTTTAACCGGTCGTGTCTAATCCAAGTGGGGACAGTGTCACCTTTGCTTCTACTTTTGTCAACGAGGAACAAATGGGCGCAAGAGAACGCCATTGCTGCTTTGCTGAAGCTCGTAAAGCACAACAATGGCAAAGAAGCTATAATGGAAAATGGAGGCTTAAAACCAATTGTGTTTGTTCTCGAGAAAGGAATAAGCCTAGAATCACGCCAAATCGCAGCCGCCATAATATTCTATCTTGCTTCTGTAAGACATTACAGAAAATTGGTAGGTGAAAACCCAGATGTAATTCCTTCTCTGGTTAAACTGATAAAGGAAGGAACAACATGTGGGAAGACGCACGCCATGTCAGCAATCTTTGGGCTTCTCTTACATACAAGTAATCATAAAAGAGTAATTGAAGCCAATACAGTGCAAGTGATTATTGATCTGCTAGCTTCGACAGAGAAGGAAGATGTGATGACAGATTCATTGGCTGTTCTCGCGGCTTTAGCAGAGAATAATGAAGGTGTAGAAGCCATGTTGAAAGTGTCGGCTGTGCCTTTGATCAGTGGGATACTGAAATCAACAACAAACAAAACAGGGAAAGAACAGTGTGTTTCGATTTTGTTATCACTGTGCGTGAATGGAGGAGAAGAAGTGATAGGTGTAATGGCGAAAGACGCATCGATAATGGGTTCCTTATATCTGATTCCTACGGATGGGACGAGTCGTGGGGCAAAGAAAGCTCGATTTCTCATGAAGATTTTGCACGAGTTTTATGAAAAACCAACTTCTGCGGCTGCAGGAGAACAACAAAACCTTGACGCTATTAATTTGTTACGTATAAGATGA 2064 0.4288 MSRYSNHDHRRLLSSPAVFPCRDISPSTLLTSLISLSLNICNFKSRFFPTQRRNAREITRQVHVTLMFLQDLPEIPEQSPFILCFSELHFSFQKILFLLQDCTRERSRVWMLMKSQYVASQFRDIIRGVATALDVLLLPLRRIEVCDDVKELVELVANQARKVKFEVDPVDEENSKLVGSILCQFEKGIEPELDDMKQVFDYLEIKTWTDCNNEIEFLQYEMDFQFSECKEPEAPLLSGLIGFLSYCRGVIFENHDPSRLIDHSEGRCTTKKMINGLNPEDFRCPISLELMTDPVTISTGHTYDRSSIQQWLKSGNKTCPKTGARLKNTNVIPNIILQKLIQQFCVDKGVSSTKFNNQSRDITKTVLPGSPSAAHAMQFLSWFLARRLVFGTMEQKNKAAYEIRLLGRSNIFNRSCLIQVGTVSPLLLLLSTRNKWAQENAIAALLKLVKHNNGKEAIMENGGLKPIVFVLEKGISLESRQIAAAIIFYLASVRHYRKLVGENPDVIPSLVKLIKEGTTCGKTHAMSAIFGLLLHTSNHKRVIEANTVQVIIDLLASTEKEDVMTDSLAVLAALAENNEGVEAMLKVSAVPLISGILKSTTNKTGKEQCVSILLSLCVNGGEEVIGVMAKDASIMGSLYLIPTDGTSRGAKKARFLMKILHEFYEKPTSAAAGEQQNLDAINLLRIR 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00160 687 FunFam RING-type E3 ubiquitin transferase 278 350 - -
Accr8g00160 687 Gene3D - 387 634 IPR011989 -
Accr8g00160 687 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Accr8g00160 687 SMART arm_5 451 492 IPR000225 GO:0005515
Accr8g00160 687 SMART arm_5 535 576 IPR000225 GO:0005515
Accr8g00160 687 SMART arm_5 577 618 IPR000225 GO:0005515
Accr8g00160 687 SMART arm_5 409 450 IPR000225 GO:0005515
Accr8g00160 687 CDD RING-Ubox_PUB 279 329 IPR045210 -
Accr8g00160 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Accr8g00160 687 SUPERFAMILY ARM repeat 393 638 IPR016024 -
Accr8g00160 687 SUPERFAMILY RING/U-box 279 350 - -
Accr8g00160 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 546 589 IPR000225 GO:0005515
Accr8g00160 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515
Accr8g00160 687 PANTHER U BOX DOMAIN-CONTAINING 55 660 - -
Accr8g00160 687 FunFam RING-type E3 ubiquitin transferase 358 671 - -
Accr8g00160 687 Pfam U-box domain 279 346 IPR003613 GO:0004842|GO:0016567
Accr8g00160 687 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00160 Accr-Chr8 2217551 2219614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00160 10 669 U-box Gene Family AT1G60190 39.525 1.58e-154 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00160 - - qsu:112020191 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00160 8 2217551 2219614 Accr8g00160 8 2217551 2219614 ECH