Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00134 ATGGCGACGTTTGCAGGCACTACCCAGAAGTGTAAAGCCTGTGAGAAAACAGTGTACTTGGTGGATCAGCTTACTGCTGACAACAAGGTTTACCACAAGTCTTGCTTCAGATGCCACCATTGTAAAGGTACCCTTAAGCTGAGTAATTATAATTCCTTTGAGGGAGTTTTATACTGTAAGCCTCATTTTGATCAACTCTTTAAGATGACTGGCAGCTTGGAAAAGAGTTTTGAAGGTATTCCAAGAACTGTTAGAGTTGACAGATCGGGTGATCAGGTCCAAAACAACAGTAAAGTTTCAAGTTTATTTGGTGGAACTCGAGAAAAGTGCGTCGCTTGCAAGAGAACAGTTTACCCAATTGAAAAGGTGGCTGTTGACGGAAGTTCTTATCACAAGGCTTGTTTCAGGTGCACCCATGGAGGTTGTGTAATCAGTCCATCAAATTACGTGGCCCACGAACATCGCCTTTATTGTAGGCACCACCATACTCAGCTTTTTAAGCAGAAGGGTAACTTCAGTCAGCTTGACAAGCATGAGAATGGCAATGGGGTGACTGAGAACACACCGAGCGAGTGA 576 0.4375 MATFAGTTQKCKACEKTVYLVDQLTADNKVYHKSCFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKMTGSLEKSFEGIPRTVRVDRSGDQVQNNSKVSSLFGGTREKCVACKRTVYPIEKVAVDGSSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDKHENGNGVTENTPSE 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00134 191 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Accr8g00134 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 103 135 - -
Accr8g00134 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Accr8g00134 191 MobiDBLite consensus disorder prediction 170 191 - -
Accr8g00134 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 174 - -
Accr8g00134 191 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Accr8g00134 191 FunFam LIM domain and actin-binding 1 5 75 - -
Accr8g00134 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Accr8g00134 191 SMART lim_4 10 62 IPR001781 -
Accr8g00134 191 SMART lim_4 109 161 IPR001781 -
Accr8g00134 191 Gene3D Cysteine Rich Protein 5 75 - -
Accr8g00134 191 Gene3D Cysteine Rich Protein 105 174 - -
Accr8g00134 191 CDD LIM2_SF3 110 170 - -
Accr8g00134 191 CDD LIM1_SF3 7 68 - -
Accr8g00134 191 PANTHER OS06G0237300 PROTEIN 4 94 - -
Accr8g00134 191 FunFam LIM domain and actin-binding 1 104 174 - -
Accr8g00134 191 Pfam LIM domain 110 165 IPR001781 -
Accr8g00134 191 Pfam LIM domain 11 65 IPR001781 -
Accr8g00134 191 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00134 Accr-Chr8 1817262 1819908 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Accr8g00134 LIM 2.5e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00134 K09377 - gmx:100500501 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00134 8 1817262 1819908 Accr12g00585 12 5517997 5520062 CCT
Accr8g00134 8 1817262 1819908 Accr8g00134 8 1817262 1819908 ECH