Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00125 ATGGGTGGTGGCAATGGCAAGCGCAGGTGGAGAATTTCCTTCCATCGTCCTTCTTCTTCTTCCTCTTCGTCTGATACCAAGCTCGAACCAAAGCAACCTCCTAAGGAGTTTCTTTGTCCAATTTCTGGGACGTTCATGTCCGACCCTGTTGTTGTTGCTTCCGGTCACACATTCGAGCGTGTTGCTGTTCAAGTTTGCAGAGATTTGAACTTCTCCCCCAGCCTCGAAGATGGTTCTCGACCTGATTTCTCTACCGTCATTTCCAATTTGGCCATCAGAAGTACCATCTCTAGTTGGTGTAAAAACTCCGGTACGGAACTCCCTCGCGCGCCTGAATATGGTTCTGTCGTGAGTGTTGTACGCGAATCAATGGCGTCCCAGAAGGACTTACCAGATTTAAGGGTTTCGGAAAGGGAATTGCTGAGGGCGGTGTCGGACAACCCGCCGGTGATATTCTCCCACGCCGCCACCGAATTTTTGGGTCCTCGGGTTAACCACTTCGATTCGGGTTCCTCGGAGGAATCCGTAATCGTCGTGCCAAGCCCCGGCACGCCTCTGCATCTAACCACTCGTCCAGCCTGTTACTCTTCATCGTCGTCTTCTTCCGCAACCGTCGAATCGGAATTTCAAAACCCTAATGGCCCAATTTCCGAAGAAGAGGACAAATTAGTCTCGAAGATGAAAAGCAGTGAGATCTTCGAGCAAGAAGAAGCCGTTATATCACTGAGAAGCATCACGAGGAACAGAGAGAACACCCGAATTTCTCTCTGCACTCCCCGATTGCTTGACGCCCTACGACCTTTGATCGTCTCCAGGTACACCGCTGTTCAAGTGAACGCCGTCGCTTCGCTGGTCAATCTCTCCCTCGAGAAATCCAATAAGGTGAAGATCGTTCGGCTGAAATTCGTCCCCCATCTCATCGACGTCTTGAAGGGTGGATCCGATGAAGCTCAGGAACACGCAGCCGGCGCCCTCTTCAGCTTAGCTTTAAATGAAGACAACAGAATGGCCATCGGAGCTCTCGGCGCGTTTCAGCCACTCATGTACGGGCTGAGATCCGAGTCGGAGCGTACCCGAAACGACTCGGCGCTCGCGTTGTACAACCTGACCTTGGTACCAAGCAATCGGGTCAAGCTCGTGAGACTTGGGGCAATCCCGTCCTTACTCGCGATGTTTAAATCAGGTAAATTGAGAAGCCGAGTGCTGCTAATTCTTTGTAATCTCGCTGCTTGCACGGAGGGGCAATCGGCGATGCTGGACGGTGATGCAGTAGAGTGCTTAGTGAGTTTATTGAAGGGGAGAGAGTTGGACTCGGAGTCGACCCGCGAGAACTGTGTTGCTGCGTTGTATGCGCTTAGCCATGGAAGCTTGAGGTTCAGAGCAGTGGCGAAGGAGGCAAGGGTTATGGAGGTGTTGAAGGAGGTTGAAGAGAGAGGTACAGAGAGAGCCAGAGAGAAAGCGAGGAGGATCATGCAGAAGCTGCGGGCGGGAGGAGAAGACGGGGAAGATGGAAACGGGTTGAGTTTTGATTTGGATTCAGATTCGGGGGGGCTGAACATGAATTGGTTCCGAGGGAGGAATGGTAACGGAGCAAACTCAACTGGATTTTAG 1611 0.5196 MGGGNGKRRWRISFHRPSSSSSSSDTKLEPKQPPKEFLCPISGTFMSDPVVVASGHTFERVAVQVCRDLNFSPSLEDGSRPDFSTVISNLAIRSTISSWCKNSGTELPRAPEYGSVVSVVRESMASQKDLPDLRVSERELLRAVSDNPPVIFSHAATEFLGPRVNHFDSGSSEESVIVVPSPGTPLHLTTRPACYSSSSSSSATVESEFQNPNGPISEEEDKLVSKMKSSEIFEQEEAVISLRSITRNRENTRISLCTPRLLDALRPLIVSRYTAVQVNAVASLVNLSLEKSNKVKIVRLKFVPHLIDVLKGGSDEAQEHAAGALFSLALNEDNRMAIGALGAFQPLMYGLRSESERTRNDSALALYNLTLVPSNRVKLVRLGAIPSLLAMFKSGKLRSRVLLILCNLAACTEGQSAMLDGDAVECLVSLLKGRELDSESTRENCVAALYALSHGSLRFRAVAKEARVMEVLKEVEERGTERAREKARRIMQKLRAGGEDGEDGNGLSFDLDSDSGGLNMNWFRGRNGNGANSTGF 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00125 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 108 IPR013083 -
Accr8g00125 536 FunFam RING-type E3 ubiquitin transferase 218 494 - -
Accr8g00125 536 MobiDBLite consensus disorder prediction 191 218 - -
Accr8g00125 536 Gene3D - 217 496 IPR011989 -
Accr8g00125 536 ProSiteProfiles U-box domain profile. 32 106 IPR003613 GO:0004842|GO:0016567
Accr8g00125 536 PANTHER U BOX DOMAIN-CONTAINING 26 493 - -
Accr8g00125 536 SMART arm_5 331 371 IPR000225 GO:0005515
Accr8g00125 536 SMART arm_5 372 410 IPR000225 GO:0005515
Accr8g00125 536 SMART arm_5 411 454 IPR000225 GO:0005515
Accr8g00125 536 SMART arm_5 290 330 IPR000225 GO:0005515
Accr8g00125 536 FunFam RING-type E3 ubiquitin transferase 15 107 - -
Accr8g00125 536 SUPERFAMILY RING/U-box 19 106 - -
Accr8g00125 536 MobiDBLite consensus disorder prediction 1 33 - -
Accr8g00125 536 SMART Ubox_2 36 99 IPR003613 GO:0004842|GO:0016567
Accr8g00125 536 MobiDBLite consensus disorder prediction 191 214 - -
Accr8g00125 536 SUPERFAMILY ARM repeat 222 494 IPR016024 -
Accr8g00125 536 Pfam U-box domain 34 102 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00125 Accr-Chr8 1734914 1736524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00125 3 536 U-box Gene Family AT5G65200 55.098 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00125 - - aip:107643932 658.677