Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00116 ATGGCTTCTTCTACTGCACTCCTTGATCCTTCCAGACACTGCACATATAATCGCAAGCAAAAATCTCTCGGCCTCCTGTGCACCAATTTCTTGAGCTTGTATAATCGAGATAGTGTTCACTTGATTGGCCTTGACGATGCGGCGGCGCGATTAGGGGTCGAGAGGCGGCGGATCTATGATATAGTTAATGTACTGGAGAGTGTCGGGGTGCTTGCAAGGAAAGCTAAGAATCAATATACTTGGAAAGGATTTGAGGCAATTCCAGGGGCCTTGCGGGAGCTCAAGGAAGAAGGTTTAAGGGAAAATTGCGATGCTTTTGATGGCAATCATGAAAGTGCAAAAATGTCAGACGATGAGGATGATGAAGAAACAATGTCCAATCCTAGTACTGGAAGTCAGAATGACAAGTCTTGTCCTAATTCTTCTCTTCTAAAATCTATGAAGAATGATAACCGAAGGGAAAAGTCCCTGTCACTTTTGACTCAGAATTTTGTCAAGCTCTTTGTTTGCCATAATATGCAGTTGATTTCCCTTGATGAAGCCGCCAGGTTGTTGCTTGGAGATGCCCATAATACGTCAATAATGAGAACGAAAGTAAGACGTCTATATGATATTGCAAATGTGCTGTCCTCCATGAACCTTATTGAGAAGACTCACACATCAGACACAAGAAAGCCTGCTTTTAGATGGCTGGGCTTGAAGGGGAAGACAGAGAACGAGTGTATTCACAATTCAAAACCCAAGGAATCCAGGAAAAGGATATTTGGTAATGATATCACAAACATCAGTTTTAAGAGGAATAAAGTGGATTTATTCTCTAATGAGGACCCCAACGAGAATACTAATCTACTAAACAAAGCGGATGGTGATAGTTGGTCCAGTGAGGCAGATAAAAGCCATGAAAATCAGTACTCAAAGCAGACTTTAACGAGCTATCAGTTCGGTCCTTTCGCTCCTGCATTTGTCCCCAAAGCGACTGCCTCTGAGAATAATGTGAAGCGGGTCCATGATTGGGATAGTCTGGCAACTGCCTATCGTCCGCAGTATCAAAACCAAGCTTTGAGAGAACTCTTCAGTCATTACATGGAAGCATGGAAATCATGGTACTCGGAAGTGGCTGGCAAGAGACCCATCCATAGTTAG 1143 0.4322 MASSTALLDPSRHCTYNRKQKSLGLLCTNFLSLYNRDSVHLIGLDDAAARLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFEAIPGALRELKEEGLRENCDAFDGNHESAKMSDDEDDEETMSNPSTGSQNDKSCPNSSLLKSMKNDNRREKSLSLLTQNFVKLFVCHNMQLISLDEAARLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTSDTRKPAFRWLGLKGKTENECIHNSKPKESRKRIFGNDITNISFKRNKVDLFSNEDPNENTNLLNKADGDSWSSEADKSHENQYSKQTLTSYQFGPFAPAFVPKATASENNVKRVHDWDSLATAYRPQYQNQALRELFSHYMEAWKSWYSEVAGKRPIHS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00116 380 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667|GO:0006355
Accr8g00116 380 SMART E2F_TDP_2 18 83 IPR003316 GO:0005667|GO:0006355
Accr8g00116 380 Pfam E2F/DP family winged-helix DNA-binding domain 19 83 IPR003316 GO:0005667|GO:0006355
Accr8g00116 380 Pfam E2F/DP family winged-helix DNA-binding domain 154 232 IPR003316 GO:0005667|GO:0006355
Accr8g00116 380 SUPERFAMILY "Winged helix" DNA-binding domain 154 233 IPR036390 -
Accr8g00116 380 MobiDBLite consensus disorder prediction 105 147 - -
Accr8g00116 380 MobiDBLite consensus disorder prediction 126 146 - -
Accr8g00116 380 SUPERFAMILY "Winged helix" DNA-binding domain 17 81 IPR036390 -
Accr8g00116 380 FunFam E2F transcription factor 8 13 85 - -
Accr8g00116 380 MobiDBLite consensus disorder prediction 275 300 - -
Accr8g00116 380 Gene3D - 13 85 IPR036388 -
Accr8g00116 380 Gene3D - 147 234 IPR036388 -
Accr8g00116 380 PANTHER TRANSCRIPTION FACTOR E2F 13 350 IPR015633 GO:0000978|GO:0006357
Accr8g00116 380 MobiDBLite consensus disorder prediction 275 289 - -
Accr8g00116 380 FunFam E2F transcription factor-like E2FE 147 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00116 Accr-Chr8 1607668 1611882 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00116 13 378 E2F-DP Transcription Factor Family AT3G48160 58.760 6.67e-138 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Accr8g00116 E2F_TDP 2.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00116 K09391 - qsa:O6P43_030916 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00116 8 1607668 1611882 Accr8g00116 8 1607668 1611882 ECH