Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00076 ATGATTACGGGCGGAAGGGTCCTTATGGGTTCTCTTACTAACGCTTCCAATTTGGGTATTTTGCTTCAAAGTCAAGCCGCTCCTTCCTCTTCTGACTCTCCCGATGCCTTTTTCCTTTCTGGCTCTTCCGCTTCTTTCCTCGGTTCAAGATCCATGGTGAGCTTTGAAGATGTTAAAAGAGGGAAAGGATGTAATCGTTCATTCTTTAGCCCTTTTGATCATGATGAAAATGGAGATGAAGATTTGGATGACTACTTTCATCAACCTGAGAAGAAGAGGCGGCTGACCGCTGACCAAGTCCAGTTTCTTGAGAAAAGCTTTGAGGTAGAGAACAAGCTTGAACCAGAGAGGAAAGTTCAACTAGCCAAGGAGGTTGGCTTGCAGCCTCGGCAAGTTGCCATTTGGTTCCAGAACCGCCGCGCACGATGGAAGACAAAACAGCTGGAGAAGGATTTCGAATCTCTGCAGGCTAGTTATGACAGTCTCAAAGCTGACTATGATAACCTTCTCAAGGAGAAAGATAAACTAAACGCTGAGGTTGCGAATCTCACAGAGAAGGTGCTTCTTAGAGAGAAACAAGACAAGCAAGAAGACAAGGGCGAAGTTAAAGAACCAGAACAAGCGCAACAGCCCTTGTTGGACACTTGTTCTGATGGTGAAGGTTCCAAAGTCTCTGTTGGGGCATGCAAACAGGAAGACATGTGTTCAGCCAAGAGTGACATATTTGATGCTGATAGCCCACATTACACTGATGGAGTTCACTCTGCGCTGCTGGAACCTGGGGATTCCTCCTATGTATTTGAACCTGATCAGTCAGATTTGTCTCAGGATGAAGAAGATAACTTGAGCAAGAACTTCTTTCCTCAATATACATTCCCCAAGCTTGAAGACGTTGACTACTCTGACCCGTCTGAAAGTTCATGCAGTTTTGGATTCCCAGCTGAAGATCATGATGCCTTTTGGTCCTGGTCTTACTAG 978 0.454 MITGGRVLMGSLTNASNLGILLQSQAAPSSSDSPDAFFLSGSSASFLGSRSMVSFEDVKRGKGCNRSFFSPFDHDENGDEDLDDYFHQPEKKRRLTADQVQFLEKSFEVENKLEPERKVQLAKEVGLQPRQVAIWFQNRRARWKTKQLEKDFESLQASYDSLKADYDNLLKEKDKLNAEVANLTEKVLLREKQDKQEDKGEVKEPEQAQQPLLDTCSDGEGSKVSVGACKQEDMCSAKSDIFDADSPHYTDGVHSALLEPGDSSYVFEPDQSDLSQDEEDNLSKNFFPQYTFPKLEDVDYSDPSESSCSFGFPAEDHDAFWSWSY 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00076 325 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 76 236 IPR045224 GO:0003700
Accr8g00076 325 SUPERFAMILY Homeodomain-like 71 148 IPR009057 -
Accr8g00076 325 Pfam Homeodomain 91 144 IPR001356 GO:0003677
Accr8g00076 325 Pfam Homeobox associated leucine zipper 146 187 IPR003106 GO:0006355|GO:0043565
Accr8g00076 325 SMART HOX_1 89 150 IPR001356 GO:0003677
Accr8g00076 325 MobiDBLite consensus disorder prediction 191 221 - -
Accr8g00076 325 CDD homeodomain 91 147 IPR001356 GO:0003677
Accr8g00076 325 PRINTS Lambda-repressor HTH signature 126 142 IPR000047 GO:0003677
Accr8g00076 325 PRINTS Lambda-repressor HTH signature 117 126 IPR000047 GO:0003677
Accr8g00076 325 Gene3D - 141 192 - -
Accr8g00076 325 Coils Coil 145 193 - -
Accr8g00076 325 FunFam Homeobox-leucine zipper protein HAT5 84 148 - -
Accr8g00076 325 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Accr8g00076 325 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
Accr8g00076 325 MobiDBLite consensus disorder prediction 191 205 - -
Accr8g00076 325 Gene3D - 94 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00076 Accr-Chr8 1151110 1152680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00076 28 323 Homeobox Transcription Factor Family AT3G01470 40.000 1.32e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr8g00076 Homeodomain 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00076 - - qsu:112006246 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00076 8 1151110 1152680 Accr8g00076 8 1151110 1152680 ECH