Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00042 ATGGAAGGAGGTGATGATCTCCACCACCACCGCCGTCCGACTTTTCCGTTTCAGCTCCTCGAGAAGAAAGAAGATCAAGAAGCTGCTTCTTGCTCCACCTCCTCTTCACCTTACCCTTCCTTAGCCATCTCTGCTGAGCCTGCCTCCTCCAATAATCCAAATCGATCAAACCAAATCATCGCCTCCGCTGATCCGGCCTCCAATAATAAGAAGCTTCCGCCTAAGAGAACCTCCACCAAGGACCGCCACACCAAGGTCGACGGGCGTGGCCGTCGCATTCGAATGCCTGCCCTCTGTGCCGCCCGAGTCTTCCAGCTTACCCGAGAGCTCGGCCACAAGTCTGACGGCGAAACCATCGAGTGGCTGCTTCAGCAGGCCGAACCTGCCGTCATCGCCGCCACCGGCACTGGAACCATCCCGGCTAACTTCACTTCGCTTAACATATCCTTGAGAAGCTCAGGATCCACTATGTCAGTACCGTCCCAGCTAAGATCCTCCTACTTTAATCCCAACTTCTCCGTCCAACAGCGCCGGAGTCTATTCCCCGGAATTGGTTTGTCTTCCGATAATACCGCCGCCGCCTCTACGCTTCTTAATTTTCAATCCAGTAACCTAACCACGAATCTGTTGCAAGCCAAGCAAGAGCTTCGCGACGGGGAGGGCCCGCCTTTGGCTGGGACGACGTTGGATTTGTCGCAGGAGAGCTCAGAAGAAGGGATGGGGCGAAAGAGGCGGCCCACAGAGCAGGACTTGTCGTCAACGCAACATCAAATGGGGAGTTATTTGTTGCAGTCAAGCGCGGGGGCGATCCCAGCAGCGAGCCATGCTCAGACTCCGGCCAACATTTGGATGGTGGCGAATTCAAGTAACCAGGTTATGAGCGGTGATCCTATATGGACATTCCCATCGGTAAACAACAGTGGATTGTATAGGGGAAGCATGTCAAGTGCGTTACATTTCATGAACTTCCCCACACCTATGGCCTTATTGCCGAGTCAACAATTGGGTTTGTCGGGGCTAACTGGTGGCGGTGGAGGCGGCGGCAGCGCTACTTCGGGCGGCAACAACATTAACGAAGGACATTTGAGTATGCTGGCAGGGCTGAGCCCGTACCGGCCCGTGATCGGGCTGTCAGAGTCTCAGGCGAGCGGGTCCCAATCACATCATCGTGGCGGAGGCGACGATCGGCACCACTCCACCAGCCACCACTCATAG 1215 0.5556 MEGGDDLHHHRRPTFPFQLLEKKEDQEAASCSTSSSPYPSLAISAEPASSNNPNRSNQIIASADPASNNKKLPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSVPSQLRSSYFNPNFSVQQRRSLFPGIGLSSDNTAAASTLLNFQSSNLTTNLLQAKQELRDGEGPPLAGTTLDLSQESSEEGMGRKRRPTEQDLSSTQHQMGSYLLQSSAGAIPAASHAQTPANIWMVANSSNQVMSGDPIWTFPSVNNSGLYRGSMSSALHFMNFPTPMALLPSQQLGLSGLTGGGGGGGSATSGGNNINEGHLSMLAGLSPYRPVIGLSESQASGSQSHHRGGGDDRHHSTSHHS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00042 404 MobiDBLite consensus disorder prediction 389 404 - -
Accr8g00042 404 MobiDBLite consensus disorder prediction 217 256 - -
Accr8g00042 404 MobiDBLite consensus disorder prediction 236 250 - -
Accr8g00042 404 MobiDBLite consensus disorder prediction 380 404 - -
Accr8g00042 404 Pfam TCP family transcription factor 77 247 IPR017887 -
Accr8g00042 404 MobiDBLite consensus disorder prediction 29 65 - -
Accr8g00042 404 MobiDBLite consensus disorder prediction 1 87 - -
Accr8g00042 404 MobiDBLite consensus disorder prediction 1 28 - -
Accr8g00042 404 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 26 378 IPR005333 GO:0003700
Accr8g00042 404 ProSiteProfiles TCP domain profile. 79 133 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00042 Accr-Chr8 664120 665334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00042 70 396 TCP Transcription Factor Family AT3G47620 45.012 7.33e-63 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Accr8g00042 TCP 6.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00042 - - gmx:100790785 517.694