Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00017 ATGGAGATGGAGAACATTCCTGTGCTGTCCAACAAGGAAGAAGGTCAGATTAATTCGTCCATTGGCTTTCGGTTTCACCCAACAGATGAAGAGCTGCTCACTCTTCTTCTGAAAAAGAAGACCCAGAATGCAAAATTCTCACATATAGCCATTGCAGAAGTGGATATACTAAAGTATGAGCCTTGGCATTTGCGGGAGCAAGCAAAAGCAGGAGAGGATGAGTGGTATTTTTTCGGCCTGTCAGAGAGAAAATACAAAAAGGGTCCGAAAATCGACAGAGCCACTGAAGCTGGGTACTGGAAATCCACAGGGAAAGATGAGGAGATTGTTAACGGAGGAAGAAGACTGAGAGGGAAGAAGAAAATTCTGGTTTTCTACGATGAACGAGAAGCACCTGTAAGAAAAACGGACTGGGTCATGCATGAATACAGACTAGATGGAAAATCCTCTGTCCCCAACCCCCCTACAACTGCAAAGAACCAGTGGCTGATTTGTAGGGTGTTTAAGAAGACTGCGGACAAAAAGAGAACCCGCAATTCTGCTATAAAGAGGTTAGACGGTTCTCCTCCAGTGTCACCTTCACCAACTGTCGTCCCAGATGATTTCCCGGACGCAGTGGGCGATGAGATAATTACTCGTTTGGCAAATTTGGCCTGCTTCTCCCCTGCGTCATGCGACGATGTTGTTGTGACAGAGGCAGAGCAAATGCTGAGTGTTTCGCATGAAACGAATCTGACCAACAGACTTGAATCCAATGGAGATGGATTGGATCCTTCTTCACTGCCACTTTCACCGCCTATCGTCCCAGGTGGCATAGGCCCAACGGAACCTACGAGTACCAATTGGGGACATGTACCCTGCTTCTCCCCTCCGTTTTGCGACTATGGTGTTATGGCAGAGCGAGAGCAAATGCTGAATGTTTCGCATGAACACTATCTGGTCAACGGTGAGTGTGGTTATAGCCTCTGGTATCTCTAG 978 0.4714 MEMENIPVLSNKEEGQINSSIGFRFHPTDEELLTLLLKKKTQNAKFSHIAIAEVDILKYEPWHLREQAKAGEDEWYFFGLSERKYKKGPKIDRATEAGYWKSTGKDEEIVNGGRRLRGKKKILVFYDEREAPVRKTDWVMHEYRLDGKSSVPNPPTTAKNQWLICRVFKKTADKKRTRNSAIKRLDGSPPVSPSPTVVPDDFPDAVGDEIITRLANLACFSPASCDDVVVTEAEQMLSVSHETNLTNRLESNGDGLDPSSLPLSPPIVPGGIGPTEPTSTNWGHVPCFSPPFCDYGVMAEREQMLNVSHEHYLVNGECGYSLWYL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00017 325 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Accr8g00017 325 Gene3D NAC domain 28 175 IPR036093 GO:0003677|GO:0006355
Accr8g00017 325 SUPERFAMILY NAC domain 16 170 IPR036093 GO:0003677|GO:0006355
Accr8g00017 325 MobiDBLite consensus disorder prediction 176 197 - -
Accr8g00017 325 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 221 - -
Accr8g00017 325 ProSiteProfiles NAC domain profile. 19 170 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00017 Accr-Chr8 294889 296036 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00017 22 228 NAC Transcription Factor Family AT5G07680 49.776 9.12e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr8g00017 NAM 6.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00017 - - gmx:100170719 201.06